Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1069 ATGTGTATGGAAACCGAGACAAATCGTCCGGTTCGTGCGATACAAGACGAGAACGAGCTTTCCGGAGGCGATGGCGACGATGACTTCGACGAGGACTTGGAAGCTCTTAGACGAGCCTGCATGCTCACCGGCGCGAAACCGGAAGGTTACAATAAGCCTTCATCCTCTCCTTCCGCCTCCGGGAAATCTGCCTCCGACGGAGTTGGCCGCATTTCAGATAGCGATGACGACGATGATCTCGAATTAGTTCGCAATATTCGTAATCGGTTCTCATTGCTGGACCAGGAGTGCAGGCGCCTGTCCCTGAATCCTCTTAGTACTCTTCCTGCGGTTGCGTCAGATGAAGAGGAAAATGATTTTGAAACTTTACGTGCAATTGAGCGGCGTTTTACGGCCTATAACTGTGATAGCTCTGGAGATTGCATGAAGGATTCCTTGAACAAGCCGGAACAGCTTCAGGCCCCTGACATATTGTTGGAGGGGCATTCGCAAGGCAATAATACCCATTTACCAAGTAAATATGTGGAGATGCAACCCTCTTCTTCAACTAAGTCACAACAAACAGGTGCATCTAGGTCATCTACAGTAGAACTCAGAAATTCTTGTCTGCCAAAGTCTGCCTTGGCATTTATTGATGCCATCAAGAAGAATAGATCTTGTCAGAAGTTTCTTCGAGGTAAGTTAGTCCACATTGAAGCAAGAATTGAGGAAAACAAAGAGCTGAGAGAGCGTTTTAAAATTCTTAAAGATTTTGAGTCCTCTTGCAAGAAGAGAACAGGGCGAGCGTTGTCCCAGAACAGAGATCCTCGTATCCAGTTAATTTCAAATAGAAAGCCACGCGGTTCTGAGGATTCATTAAAGCAGGCAAAAGACAAAAAGTTATCCACCATGTATTATGGCCCAGCAGAGAATTCTGATGTTGCGAACTATAAAATGGCGTTGACTAAGTTTCCACTCTCAGTAGAACAGAAAGTATGGCGAAAGGCAGAAAAGGAAAATCTAGGGAAGGGAATTAAACAGCAATTTCAGGAAATGGCTCTTCAGATACTTGTTGATAGGTTCAGTGTTGCAGAGGGATCTGCTGGTGATTCGAATAACATTGATAAAAGTTTAGCAACAATTAAAGATCTTGACATTACCCCTGAAATGATTAGGAAATTTCTTCCAAAGGTTAATTGGGATAAATTAGCTTCCATGTATGTTGTGGGTCGCTCTGGTGCAGAATGCGAAGCCCGGTGGTCAAATTATGAAGATCCTTTGATAAATCACAATTCATGGAGCACAATGGAGGATAAGAAGCTTTTGTTTATTATTCAAAAGGAGGGAATTAATAACTGGATCAATATCGCAGAATCATTGGGAACAAGCAGGACTCCCTGTCAGTGCTTGGCACGTTATCAGAGGAGTTTAAATGCTTCAATATTGAAAAGGAAGTGGACCAAGGAAGAGGATGATAAACTTTGTGTTGCTGTAGAAACTTTTGGAAGGAGAGATTGGCAGACAGTGGCATCAGCAATGGAAGGACGAACTGGTCCCCAATGCTCTAATAGATGGAAGAAATCCCTTGACCCATCAAGGACAAGAAAAGGCTCATTCACTCCAGATGAAGACAAGCGCCTCAAGATAGCTGTGATGCTTTTTGGCCCAAAAAATTGGAACAAGAAAGCCCAATTCATTCTCGGTCGAAATCAAGTTCAATGTCGAGAAAGATGGTATAATTGCTTAGATCCCAATTTAAAACGAGGGAAATGGACAGAAGAGGAGGATTCGAGGCTTGAAGAAGCAATAAGAAAACATGGATATAGCTGGGCCAAAGTTGCTACATGGGTGCCTTCACGTACTGACAGCGAATGTCGGAGGAGGTGGACGAAGTTATTCCCTCACGAAGTTCCCTTACTGCAAGAAGCTAGGAGGATTCAGAAAGCTGCACTCATAGGAAATTTTGTAGATCGGGAGGAGGAACGTTCTTCCCTTGGCCCTAGTGATTTTCATCCATTGCCCATTAGAAATTTAATCTGTGGTCCTGAAAGTACAAACACATCTGTGAGGAATACTAGAAAGCCTAGCAGAAAGCCAGTACCAAAGAAGGAAAAGAGTGCTTCTTGTTTCACAGCAGCCTTCCAAAGACGGAGAAATTCAAGAAGTCTGGCAAGAAAGATGGTGGAGTAG 2169 43.66 MCMETETNRPVRAIQDENELSGGDGDDDFDEDLEALRRACMLTGAKPEGYNKPSSSPSASGKSASDGVGRISDSDDDDDLELVRNIRNRFSLLDQECRRLSLNPLSTLPAVASDEEENDFETLRAIERRFTAYNCDSSGDCMKDSLNKPEQLQAPDILLEGHSQGNNTHLPSKYVEMQPSSSTKSQQTGASRSSTVELRNSCLPKSALAFIDAIKKNRSCQKFLRGKLVHIEARIEENKELRERFKILKDFESSCKKRTGRALSQNRDPRIQLISNRKPRGSEDSLKQAKDKKLSTMYYGPAENSDVANYKMALTKFPLSVEQKVWRKAEKENLGKGIKQQFQEMALQILVDRFSVAEGSAGDSNNIDKSLATIKDLDITPEMIRKFLPKVNWDKLASMYVVGRSGAECEARWSNYEDPLINHNSWSTMEDKKLLFIIQKEGINNWINIAESLGTSRTPCQCLARYQRSLNASILKRKWTKEEDDKLCVAVETFGRRDWQTVASAMEGRTGPQCSNRWKKSLDPSRTRKGSFTPDEDKRLKIAVMLFGPKNWNKKAQFILGRNQVQCRERWYNCLDPNLKRGKWTEEEDSRLEEAIRKHGYSWAKVATWVPSRTDSECRRRWTKLFPHEVPLLQEARRIQKAALIGNFVDREEERSSLGPSDFHPLPIRNLICGPESTNTSVRNTRKPSRKPVPKKEKSASCFTAAFQRRRNSRSLARKMVE 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6442206 6450477 + Conep06aG0111300.1 Cone6ag1069 439953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1069 722 ProSiteProfiles SANT domain profile. 583 630 IPR017884 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 506 520 - -
Cone6ag1069 722 CDD SANT 583 626 IPR001005 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 49 67 - -
Cone6ag1069 722 Gene3D - 475 525 - -
Cone6ag1069 722 Gene3D - 526 580 - -
Cone6ag1069 722 CDD SANT 531 573 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 524 575 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 576 626 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 471 522 IPR001005 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 556 628 IPR009057 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 161 196 - -
Cone6ag1069 722 Gene3D - 421 471 - -
Cone6ag1069 722 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 471 526 IPR017930 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 581 625 IPR001005 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 476 520 IPR001005 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 424 468 IPR001005 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 529 575 IPR001005 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 456 524 IPR009057 -
Cone6ag1069 722 ProSiteProfiles SANT domain profile. 474 523 IPR017884 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 400 467 IPR009057 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 513 558 IPR009057 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 674 701 - -
Cone6ag1069 722 CDD SANT 478 522 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 418 470 IPR001005 -
Cone6ag1069 722 Gene3D - 583 629 - -
Cone6ag1069 722 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 24 698 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cone6ag1069 722 SMART sant 580 628 IPR001005 -
Cone6ag1069 722 SMART sant 528 577 IPR001005 -
Cone6ag1069 722 SMART sant 422 472 IPR001005 -
Cone6ag1069 722 SMART sant 475 524 IPR001005 -
Cone6ag1069 722 SMART sant 322 419 IPR001005 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 1 77 - -
Cone6ag1069 722 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 528 575 IPR017930 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 506 533 - -
Cone6ag1069 722 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 576 630 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1069 K09422 - - csv:101216287 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0610 Cone-Chr12:5408842 Cone6ag1069 Cone-Chr6:6442206 5.02E-12 dispersed
Cone6ag1069 Cone-Chr6:6442206 Cone10ag1308 Cone-Chr10:10215708 9.12E-16 dispersed
Cone6ag1069 Cone-Chr6:6442206 Cone3ag0342 Cone-Chr3:1724791 2.08E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0610 . 1 819 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1192.6
Cone8ag0627 . 1 820 MYB-Related Transcription Factor Family AT1G09770 75.4 0.0e+00 1173.7
Cone6ag1069 . 200 677 MYB-Related Transcription Factor Family AT3G18100 55.5 6.6e-151 531.9
Cone6ag1069 . 200 677 MYB-Related Transcription Factor Family AT3G18100 55.5 6.6e-151 531.9
Cone12ag0610 . 1 819 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1192.6
Cone8ag0627 . 1 820 MYB-Related Transcription Factor Family AT1G09770 75.4 0.0e+00 1173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46361 PF02453 Reticulon 2.10E-57 CL0484 Cone TF