Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1069 ATGTGTATGGAAACCGAGACAAATCGTCCGGTTCGTGCGATACAAGACGAGAACGAGCTTTCCGGAGGCGATGGCGACGATGACTTCGACGAGGACTTGGAAGCTCTTAGACGAGCCTGCATGCTCACCGGCGCGAAACCGGAAGGTTACAATAAGCCTTCATCCTCTCCTTCCGCCTCCGGGAAATCTGCCTCCGACGGAGTTGGCCGCATTTCAGATAGCGATGACGACGATGATCTCGAATTAGTTCGCAATATTCGTAATCGGTTCTCATTGCTGGACCAGGAGTGCAGGCGCCTGTCCCTGAATCCTCTTAGTACTCTTCCTGCGGTTGCGTCAGATGAAGAGGAAAATGATTTTGAAACTTTACGTGCAATTGAGCGGCGTTTTACGGCCTATAACTGTGATAGCTCTGGAGATTGCATGAAGGATTCCTTGAACAAGCCGGAACAGCTTCAGGCCCCTGACATATTGTTGGAGGGGCATTCGCAAGGCAATAATACCCATTTACCAAGTAAATATGTGGAGATGCAACCCTCTTCTTCAACTAAGTCACAACAAACAGGTGCATCTAGGTCATCTACAGTAGAACTCAGAAATTCTTGTCTGCCAAAGTCTGCCTTGGCATTTATTGATGCCATCAAGAAGAATAGATCTTGTCAGAAGTTTCTTCGAGGTAAGTTAGTCCACATTGAAGCAAGAATTGAGGAAAACAAAGAGCTGAGAGAGCGTTTTAAAATTCTTAAAGATTTTGAGTCCTCTTGCAAGAAGAGAACAGGGCGAGCGTTGTCCCAGAACAGAGATCCTCGTATCCAGTTAATTTCAAATAGAAAGCCACGCGGTTCTGAGGATTCATTAAAGCAGGCAAAAGACAAAAAGTTATCCACCATGTATTATGGCCCAGCAGAGAATTCTGATGTTGCGAACTATAAAATGGCGTTGACTAAGTTTCCACTCTCAGTAGAACAGAAAGTATGGCGAAAGGCAGAAAAGGAAAATCTAGGGAAGGGAATTAAACAGCAATTTCAGGAAATGGCTCTTCAGATACTTGTTGATAGGTTCAGTGTTGCAGAGGGATCTGCTGGTGATTCGAATAACATTGATAAAAGTTTAGCAACAATTAAAGATCTTGACATTACCCCTGAAATGATTAGGAAATTTCTTCCAAAGGTTAATTGGGATAAATTAGCTTCCATGTATGTTGTGGGTCGCTCTGGTGCAGAATGCGAAGCCCGGTGGTCAAATTATGAAGATCCTTTGATAAATCACAATTCATGGAGCACAATGGAGGATAAGAAGCTTTTGTTTATTATTCAAAAGGAGGGAATTAATAACTGGATCAATATCGCAGAATCATTGGGAACAAGCAGGACTCCCTGTCAGTGCTTGGCACGTTATCAGAGGAGTTTAAATGCTTCAATATTGAAAAGGAAGTGGACCAAGGAAGAGGATGATAAACTTTGTGTTGCTGTAGAAACTTTTGGAAGGAGAGATTGGCAGACAGTGGCATCAGCAATGGAAGGACGAACTGGTCCCCAATGCTCTAATAGATGGAAGAAATCCCTTGACCCATCAAGGACAAGAAAAGGCTCATTCACTCCAGATGAAGACAAGCGCCTCAAGATAGCTGTGATGCTTTTTGGCCCAAAAAATTGGAACAAGAAAGCCCAATTCATTCTCGGTCGAAATCAAGTTCAATGTCGAGAAAGATGGTATAATTGCTTAGATCCCAATTTAAAACGAGGGAAATGGACAGAAGAGGAGGATTCGAGGCTTGAAGAAGCAATAAGAAAACATGGATATAGCTGGGCCAAAGTTGCTACATGGGTGCCTTCACGTACTGACAGCGAATGTCGGAGGAGGTGGACGAAGTTATTCCCTCACGAAGTTCCCTTACTGCAAGAAGCTAGGAGGATTCAGAAAGCTGCACTCATAGGAAATTTTGTAGATCGGGAGGAGGAACGTTCTTCCCTTGGCCCTAGTGATTTTCATCCATTGCCCATTAGAAATTTAATCTGTGGTCCTGAAAGTACAAACACATCTGTGAGGAATACTAGAAAGCCTAGCAGAAAGCCAGTACCAAAGAAGGAAAAGAGTGCTTCTTGTTTCACAGCAGCCTTCCAAAGACGGAGAAATTCAAGAAGTCTGGCAAGAAAGATGGTGGAGTAG 2169 43.66 MCMETETNRPVRAIQDENELSGGDGDDDFDEDLEALRRACMLTGAKPEGYNKPSSSPSASGKSASDGVGRISDSDDDDDLELVRNIRNRFSLLDQECRRLSLNPLSTLPAVASDEEENDFETLRAIERRFTAYNCDSSGDCMKDSLNKPEQLQAPDILLEGHSQGNNTHLPSKYVEMQPSSSTKSQQTGASRSSTVELRNSCLPKSALAFIDAIKKNRSCQKFLRGKLVHIEARIEENKELRERFKILKDFESSCKKRTGRALSQNRDPRIQLISNRKPRGSEDSLKQAKDKKLSTMYYGPAENSDVANYKMALTKFPLSVEQKVWRKAEKENLGKGIKQQFQEMALQILVDRFSVAEGSAGDSNNIDKSLATIKDLDITPEMIRKFLPKVNWDKLASMYVVGRSGAECEARWSNYEDPLINHNSWSTMEDKKLLFIIQKEGINNWINIAESLGTSRTPCQCLARYQRSLNASILKRKWTKEEDDKLCVAVETFGRRDWQTVASAMEGRTGPQCSNRWKKSLDPSRTRKGSFTPDEDKRLKIAVMLFGPKNWNKKAQFILGRNQVQCRERWYNCLDPNLKRGKWTEEEDSRLEEAIRKHGYSWAKVATWVPSRTDSECRRRWTKLFPHEVPLLQEARRIQKAALIGNFVDREEERSSLGPSDFHPLPIRNLICGPESTNTSVRNTRKPSRKPVPKKEKSASCFTAAFQRRRNSRSLARKMVE 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6442206 6450477 + Conep06aG0111300.1 Cone6ag1069 439953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1069 722 ProSiteProfiles SANT domain profile. 583 630 IPR017884 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 506 520 - -
Cone6ag1069 722 CDD SANT 583 626 IPR001005 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 49 67 - -
Cone6ag1069 722 Gene3D - 475 525 - -
Cone6ag1069 722 Gene3D - 526 580 - -
Cone6ag1069 722 CDD SANT 531 573 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 524 575 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 576 626 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 471 522 IPR001005 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 556 628 IPR009057 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 161 196 - -
Cone6ag1069 722 Gene3D - 421 471 - -
Cone6ag1069 722 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 471 526 IPR017930 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 581 625 IPR001005 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 476 520 IPR001005 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 424 468 IPR001005 -
Cone6ag1069 722 Pfam Myb-like DNA-binding domain 529 575 IPR001005 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 456 524 IPR009057 -
Cone6ag1069 722 ProSiteProfiles SANT domain profile. 474 523 IPR017884 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 400 467 IPR009057 -
Cone6ag1069 722 SUPERFAMILY Homeodomain-like 513 558 IPR009057 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 674 701 - -
Cone6ag1069 722 CDD SANT 478 522 IPR001005 -
Cone6ag1069 722 ProSiteProfiles Myb-like domain profile. 418 470 IPR001005 -
Cone6ag1069 722 Gene3D - 583 629 - -
Cone6ag1069 722 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 24 698 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cone6ag1069 722 SMART sant 580 628 IPR001005 -
Cone6ag1069 722 SMART sant 528 577 IPR001005 -
Cone6ag1069 722 SMART sant 422 472 IPR001005 -
Cone6ag1069 722 SMART sant 475 524 IPR001005 -
Cone6ag1069 722 SMART sant 322 419 IPR001005 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 1 77 - -
Cone6ag1069 722 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 528 575 IPR017930 -
Cone6ag1069 722 MobiDBLite consensus disorder prediction 506 533 - -
Cone6ag1069 722 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 576 630 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0610 Cone-Chr12:5408842 Cone6ag1069 Cone-Chr6:6442206 5.02E-12 dispersed
Cone6ag1069 Cone-Chr6:6442206 Cone10ag1308 Cone-Chr10:10215708 9.12E-16 dispersed
Cone6ag1069 Cone-Chr6:6442206 Cone3ag0342 Cone-Chr3:1724791 2.08E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46361 PF02453 Reticulon 2.10E-57 CL0484 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1069 K09422 - csv:101216287 776.163