Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1091 ATGTTGGCCCCTTCAAAAACCTCTCTCGCCGACGCTTACGCACTTTCCTCCCGTTCTTTTCTCAACCCTTTCCGTCTGCGTTCTTCGCCCACAACAATCACAACTACCCCGTGCGGCAGGTCGTCTTGGGTGAACCCGGTTCAATGTGGTCTAAGAGAAATTCGAGACCGTATTGACTCAGTCAAGAACACTCAGAAGATCACAGAAGCTATGAAACTTGTGGCTGCTGCTAAAGTCCGGCGAGCTCAAGAAGCAGTCGTGAATGGCAGACCCTTCTCAGAAACCCTAGTTGGAGTCCTTTACAGCATCAATGAACAGCTCCAAACTGAAGATGTAGATGTTCCTTTAACAAGCGTACGGCCCGTTAAGAAAGTTGCCTTGGTTGTTGTCACAGGTGATCGAGGACTTTGTGGCAGTTTCAATAACTCGATCTTAAAAAAAGCCGAAGCGAGAATCAAAGAGTTGAAAGCTCTCGGCCTAGAATATACCGTTATAAGCGTCGGCAAAAAGGGAAACACCTATTTTCTCCGCCGGCCTTTTATCCCAGTCGATATGTTTCTAGAAGGTGGAACTCTTCCTACTGCTAAAGAAGCTCAAGCGATAGCCGACGATGTTTTTTCACTTTTCATAAGTGAAGAGGTCGATAAAGTCGAGCTTCTCTACACAAAATTCGTCTCTCTTGTTAAATCCAATCCTGTCATTCACACGCTTCTTCCATTATCCCCCAAGGGAGAGATATGTGATATAAACGGCGTTTGCGTAGATGCAGCTGAGGATGAGTTTTTTAGGTTAACAACGAAAGAAGGAAAGTTGACGATAGAGATGGATACTGTGAAAACGCAGACAGAAGATTTTTCCCCAATTTTGCTGTTTGATCAGGATCCCGTTCAGATTCTTGATGCTTTGTTGCCGTTGTATTTAAACAGTCAGATTTTGAGGGCCTTACAGGAGTCTTTAGCGAGTGAACTTGCGGCGAGGATGACTGCTATGAGTAACGCAACCGATAATGCAGACGAGTTGAAGAAAACTTTGTCTATGGTGTATAATAGGCAACGACAGGCGAAAATCACCGGAGAAATATTGGAGATTGTTGCTGGTGCTAACGCTTTATCGTAG 1116 44.89 MLAPSKTSLADAYALSSRSFLNPFRLRSSPTTITTTPCGRSSWVNPVQCGLREIRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVGVLYSINEQLQTEDVDVPLTSVRPVKKVALVVVTGDRGLCGSFNNSILKKAEARIKELKALGLEYTVISVGKKGNTYFLRRPFIPVDMFLEGGTLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSNPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTIEMDTVKTQTEDFSPILLFDQDPVQILDALLPLYLNSQILRALQESLASELAARMTAMSNATDNADELKKTLSMVYNRQRQAKITGEILEIVAGANALS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6652794 6654507 + Conep06aG0113500.1 Cone6ag1091 439975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1091 371 FunFam ATP synthase gamma chain, chloroplastic 267 370 - -
Cone6ag1091 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 FunFam ATP synthase gamma chain, chloroplastic 118 241 - -
Cone6ag1091 371 PANTHER ATP SYNTHASE GAMMA CHAIN 5 370 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cone6ag1091 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 115 - -
Cone6ag1091 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 FunFam ATP synthase gamma chain, chloroplastic 49 116 - -
Cone6ag1091 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 266 370 - -
Cone6ag1091 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Cone6ag1091 371 NCBIfam ATP synthase F1 subunit gamma 50 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone6ag1091 371 Gene3D - 116 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0006 Cone-Chr1:78278 Cone6ag1091 Cone-Chr6:6652794 1.30E-194 dispersed
Cone5ag1860 Cone-Chr5:13031201 Cone6ag1091 Cone-Chr6:6652794 4.04E-189 dispersed
Cone6ag1091 Cone-Chr6:6652794 Cone9ag0067 Cone-Chr9:316838 2.70E-128 dispersed
Cone16ag0209 Cone-Chr16:1403310 Cone6ag1091 Cone-Chr6:6652794 3.62E-13 transposed
Cone2ag0804 Cone-Chr2:34047874 Cone6ag1091 Cone-Chr6:6652794 9.32E-12 transposed
Cone6ag0055 Cone-Chr6:304524 Cone6ag1091 Cone-Chr6:6652794 6.96E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1091 K02115 - csv:101214408 588.186