Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1100 ATGGGAAGGGGAAAGCTAGAGATCAAAAGGATAGAAAATCGAAGCTCAAGGCAAGTGACGTTTAGCAAACGGCGTTCTGGACTATTCAAGAAGACCCACGAACTTTCTGTTCTCTGTGATGCTCAGATCGGTCTCATTGTCTTCTCAAGCACCGGAAAGATGTCTCAGTACTGCAGCGAGACAACTTGCATGGAGGAAATCATTAAAAGTTACCAGATTGCTACAGGGACTCGTATTAACCCACACCAGAATATTAATGATGCTTCAGAAGAAATGCATAAGGAAGTGAGGAGGATTAAAACAGAAACCCATAATCTTCAATTGAGCTTGCAACGTTACAAAGGCGAAGATTTAAGCTCTTTCAAGCTGGAGGATCTGGATGTACATGAACACCAACTCGAGTTCTCTCTTAATCAAATTCGAGCCCGAAAGTTTGAGATATTGCAGCAACAAATAGACAATCTTCAGAGAAAGGTAAATATATATATCTCTAAAAGAGTCTCTTCCTCTCTTTACTCAATTTTGTTTTTTTTTTTTAATTTATTCTGA 549 38.98 MGRGKLEIKRIENRSSRQVTFSKRRSGLFKKTHELSVLCDAQIGLIVFSSTGKMSQYCSETTCMEEIIKSYQIATGTRINPHQNINDASEEMHKEVRRIKTETHNLQLSLQRYKGEDLSSFKLEDLDVHEHQLEFSLNQIRARKFEILQQQIDNLQRKVNIYISKRVSSSLYSILFFFFNLF 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6826055 6827080 + Conep06aG0114400.1 Cone6ag1100 439984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1100 182 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 Coils Coil 138 165 - -
Cone6ag1100 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone6ag1100 182 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone6ag1100 182 ProSiteProfiles K-box domain profile. 89 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag1100 182 Gene3D - 13 107 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone6ag1100 182 Pfam K-box region 87 161 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag1100 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1947 Cone-Chr4:13734288 Cone6ag1100 Cone-Chr6:6826055 2.31E-25 dispersed
Cone6ag1100 Cone-Chr6:6826055 Cone7ag1502 Cone-Chr7:10493014 4.98E-31 dispersed
Cone6ag1100 Cone-Chr6:6826055 Cone6ag0933 Cone-Chr6:4798470 2.78E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46363 PF10604 Polyketide_cyc2 1.50E-21 CL0209 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1100 - - - 0.0