Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1102 ATGAACTGGACCAGGGGTCGGACCCTTGGCCGTGGCTCATCAGCCACGGTTTGGATCGCATTGGCTGATCACCTGTCCGGTCAACCTCTTGCAGTCAAGTCAGTCGAGCTTTCAGAATCAGAATTGCTCAAGAGGGAGACAAAAATTCTAGCTTCATTAAATTGTCATCAAATTGTAGCATACAAGGGAAGCGACACAACGTATGAGAATGGAAAATTCTTATACAACTTGTTCATGGAATACATCCCAGGTGGCACAATCACAGAGGTTATTGGCAATCATGGCGGTCGCTTAGACGAGGCCACAGTCCAATCCTACACACGACAAATATTGCTCGGTCTTGATTACCTCCACCGCGAAGGTATAGTACACTGTGACATTAAGGGTCGGAATATTTTGGTCTGTAGGGACAGGGTAAAGATAGCTGATCTTGGTTGCGCAAAGATGGTTAAGGATCATAAGCTAAGCGGGCCCGTAATTTCCGGGACACCGGCTTTCATGGCGCCAGAAGTGGCTCGTGGGGAGCAACAGGGGTACCCAGCCGACGTGTGGGCTCTGGGATGTACGGTGATCGAGATGCTGACTGGGAGAGCCCCGTGGAGCAGTACTGATCACGTGTCAGACCCGGTATCGGTTCTTTACCAAATTGGGTTTTCCAATGATGTGCCTGAGATCCCAAGCTCTATGTCTAAGCAAGTCCGACAAGTGTTTTGGATCAACCTGGCTTTTGGGAGTCCGTGGAGGAGACCGAAACAGTTTCCGATCAGAATCCGGACGGTATGCTTATTTCTGATAGTGCACCGGCAAGAAGATTACAAGGACTTGTGA 828 49.4 MNWTRGRTLGRGSSATVWIALADHLSGQPLAVKSVELSESELLKRETKILASLNCHQIVAYKGSDTTYENGKFLYNLFMEYIPGGTITEVIGNHGGRLDEATVQSYTRQILLGLDYLHREGIVHCDIKGRNILVCRDRVKIADLGCAKMVKDHKLSGPVISGTPAFMAPEVARGEQQGYPADVWALGCTVIEMLTGRAPWSSTDHVSDPVSVLYQIGFSNDVPEIPSSMSKQVRQVFWINLAFGSPWRRPKQFPIRIRTVCLFLIVHRQEDYKDL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6833662 6834732 - Conep06aG0114600.1 Cone6ag1102 439986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1102 275 ProSiteProfiles Protein kinase domain profile. 3 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1102 275 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524(InterPro)
Cone6ag1102 275 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
Cone6ag1102 275 Pfam Protein kinase domain 4 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1102 275 CDD STKc_MAPKKK 2 234 - -
Cone6ag1102 275 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 237 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone6ag1102 275 SUPERFAMILY Protein kinase-like (PK-like) 2 242 IPR011009 -
Cone6ag1102 275 Gene3D Transferase(Phosphotransferase) domain 1 87 251 - -
Cone6ag1102 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1102 275 SMART serkin_6 3 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1369 Cone-Chr12:10167618 Cone6ag1102 Cone-Chr6:6833662 3.63E-88 dispersed
Cone6ag1102 Cone-Chr6:6833662 Cone8ag0131 Cone-Chr8:677629 6.46E-53 dispersed
Cone14ag1159 Cone-Chr14:9566867 Cone6ag1102 Cone-Chr6:6833662 2.93E-74 wgd
Cone15ag1175 Cone-Chr15:9476846 Cone6ag1102 Cone-Chr6:6833662 1.80E-71 wgd
Cone6ag1102 Cone-Chr6:6833662 Cone8ag1426 Cone-Chr8:11113054 1.83E-89 wgd
Cone6ag1102 Cone-Chr6:6833662 Cone9ag1107 Cone-Chr9:7093102 1.77E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82949 PF00847 AP2 3.70E-13 CL0081 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1102 K20716 - rcu:8277994 289.271