Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1118 ATGTCAACGAGGTCGTCCACCACGAGCAGGACTCGAGTGGGGAGGTACGAGCTGGGCCGGACTCTCGGAGAGGGGAATTTTGCTAAGGTTAAGTTCGCGCGCAATTTGGAGACCAACGAGAACGTAGCGATCAAAATCCTTGACAAAGAGAAGGTTCTCAAGCACAAGATTATCGGTCAGATTAAGCGTGAGATATCAACGATGAAGTTAATTAGACATCCAAATGTCATCCGTATGTATGAGGTGATGGCTAGCAAGACAAAAATATATATAGTTTTGGAATTTGTGACTGGTGGTGAGCTGTTTGACAAAATTGCTAGTAAAGGGAGGCTGAAAGAAGATGAAGCAAGGAAATATTTCCAGCAGCTTATAAATGCTGTGGATTATTGTCATAGCAGAGGGGTTTTCCATAGAGATCTTAAGCCAGAGAATTTGCTTCTGGATGCTAACGGAACTCTTAAAGTTTCAGACTTTGGATTGAGTGCGCTACCTCAACAACTGGGTGAGGACGGACTACTACACACAACTTGTGGAACACCAAATTATGTTGCTCCAGAGGTTATCAACAACAAAGGCTATGATGGTGCAAAGGCGGATTTATGGTCATGTGGTGTAATTCTTTTTGTCCTAATGGCCGGCTATTTGCCTTTTGAAGATTCCAACCTCATGGCATTGTATAAAAAGATATTTAAAGCCGACTTCACATGTCCACCTTGGTTCTCAACAAGTGCAAAGAAACTAATCAAAAGAATCCTGGAGCCTGATCCCTCAAAGAGAATTACAGTGGCAGAGGTCATTGAAAATGAGTGGTTTAAGAAAGGATATAAGCCGCCCAGTTTTGGGCAAGCTGATGTCACTCTTGATGATGTAGATGCTGTCTTCAATGAATCTATGGATTCTGGTAACTTTATCGTTGAGAGGAGGGAAGAAGGACCTGTTTCACCTGTCACCATGAATGCGTTTGAGCTCATCTCTACTTCTCAGGGCCTCAACCTCAGCACTCTTTTTGAAAAGCAGATGGGGCTTGTTAAACGAGAAACGAGATTCACATCTAACCGTCCTGCGAATGAGATAATTTCAAAAATTGAGGAAGCTGCAATGCCTTTGGGTTTTGGTGTGAAGAAAAATAACTTCAAGATGAAACTTAAAGGGGAAAAAAGTGGCCGTAAAGGTCAATTATCTGTTGCGACAGAGATTTTTGAGGTGGCCCCATCACTCTACATGGTTGAACTTCGAAAGGCTTGTGGAGATACCTTGGAATTTCACAAGTTCTATAAGAACCTTTCGACCGGGCTAAAAGATATTGTCTGGAAACACGGAGACAGTGAAGAGGAAGAAAATAGTGGTGCTGTTCCAGCTGTTCCAGCTGTTCCAAAATCTTCTGCGTAA 1389 42.69 MSTRSSTTSRTRVGRYELGRTLGEGNFAKVKFARNLETNENVAIKILDKEKVLKHKIIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGTLKVSDFGLSALPQQLGEDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLMALYKKIFKADFTCPPWFSTSAKKLIKRILEPDPSKRITVAEVIENEWFKKGYKPPSFGQADVTLDDVDAVFNESMDSGNFIVERREEGPVSPVTMNAFELISTSQGLNLSTLFEKQMGLVKRETRFTSNRPANEIISKIEEAAMPLGFGVKKNNFKMKLKGEKSGRKGQLSVATEIFEVAPSLYMVELRKACGDTLEFHKFYKNLSTGLKDIVWKHGDSEEEENSGAVPAVPAVPKSSA 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7140717 7148246 + Conep06aG0116200.1 Cone6ag1118 440002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1118 462 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Cone6ag1118 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1118 462 FunFam Non-specific serine/threonine protein kinase 312 438 - -
Cone6ag1118 462 Gene3D Kinase associated domain 1, KA1 313 438 - -
Cone6ag1118 462 FunFam Non-specific serine/threonine protein kinase 9 311 - -
Cone6ag1118 462 Pfam NAF domain 315 375 IPR004041 GO:0007165(InterPro)
Cone6ag1118 462 SUPERFAMILY Protein kinase-like (PK-like) 13 284 IPR011009 -
Cone6ag1118 462 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165(InterPro)
Cone6ag1118 462 MobiDBLite consensus disorder prediction 443 462 - -
Cone6ag1118 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 426 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone6ag1118 462 CDD STKc_SnRK3 15 270 - -
Cone6ag1118 462 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Cone6ag1118 462 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1118 462 CDD CIPK_C 319 434 - -
Cone6ag1118 462 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1118 462 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1118 462 Gene3D Transferase(Phosphotransferase) domain 1 96 278 - -
Cone6ag1118 462 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0676 Cone-Chr14:3489720 Cone6ag1118 Cone-Chr6:7140717 3.33E-154 dispersed
Cone15ag0687 Cone-Chr15:3700415 Cone6ag1118 Cone-Chr6:7140717 1.32E-148 dispersed
Cone16ag0476 Cone-Chr16:6943301 Cone6ag1118 Cone-Chr6:7140717 1.22E-81 dispersed
Cone1ag0276 Cone-Chr1:1872727 Cone6ag1118 Cone-Chr6:7140717 2.52E-224 dispersed
Cone4ag0522 Cone-Chr4:2338067 Cone6ag1118 Cone-Chr6:7140717 2.16E-83 dispersed
Cone4ag0668 Cone-Chr4:3296691 Cone6ag1118 Cone-Chr6:7140717 2.90E-175 dispersed
Cone6ag1118 Cone-Chr6:7140717 Cone7ag0630 Cone-Chr7:3198882 5.74E-180 dispersed
Cone11ag1560 Cone-Chr11:10850903 Cone6ag1118 Cone-Chr6:7140717 2.22E-221 transposed
Cone18ag0987 Cone-Chr18:7258528 Cone6ag1118 Cone-Chr6:7140717 1.02E-227 transposed
Cone5ag1426 Cone-Chr5:9014618 Cone6ag1118 Cone-Chr6:7140717 6.67E-195 transposed
Cone5ag1568 Cone-Chr5:10936351 Cone6ag1118 Cone-Chr6:7140717 1.87E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82951 PF00240 ubiquitin 4.80E-09 CL0072 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1118 - - - 0.0