Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1120 ATGGAACAGTTAGCGGAAGAAACTCGACAGAGAGAGGGTTATTCTTCCATGTGCACTCAGAAAAGCAACCATGCTGTTGAATCCTCCTCTGGTAGTCCTCGACATAGAAAGGTTTCAGCCAGATGGGACCCATATGAACCATGCAGGCCTATCATTGATGAAGCTCCTGTATATTATCCCACTGTGGAGGAGTTTCAGGATACACTTGGTTACATAGCAAAGATTCGCACAGAAGCAGAACATTATGGTATATGCCGGATTGTCCCTCCCCCTTCCTGGAATCCACCTTGCCCTCTTAGGAAGAAAGATAAATGGGAAGATGCAAAGTTTCCTACTCGTATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAGGAAGAAGAACAGGGGACGGAAAAGAAAACGTAGGAAGCACTCAAGAACGGGAACAAGCAGGCCCACCAATCCTGGCTTAGAAGCTACTACTGCATCTGAGGCTGAAGAAAAGTTCGGTTTCAACTCTGGGCCAGGCTTCAATTTTCGAGATTTTCAGAGCTATGCTGACTATTTCAAGGAGTGTTATTTTGGAATGAAGGAATCTAAGGAATTAGAATGTAGTGAAATTGAGGTCAATAATAAATGGGTGCCATCTGAGGAGGATATTGAAGGTGAATACTGGCGTATAATTGAGCAACCAACTGATGAAGTTGAGGTATACTACGGAGCTGACTTGGAATCGGGAACATTTGGAAGTGGATTTCCTAAGGCATCATCTATGTCAACTGAAGGTGATTCAGATGAATATTTAAAGTCGGGTTGGAACCTTAATAACTTCCCACGCCTACCAGGTTCCGTATTGTGTTTCGAGGAAAGCGATATCTCTGGAGTGGTAGTGCCATGGCTCTATGTTGGAATGTGCTTCTCGTCATTTTGTTGGCATGTTGAGGACCACCATCTTTACTCACTAAACTATTTGCACTGGGGTGACCCAAAAGTATGGTACGGAGTTCCTGGAAGCCATGCTTCTTTTCTAGAAGCTGCAATGAAAAAGCATTTGCCCGATTTATTTGAAGAACAACCCCATTTACTTCATGAACTGGTTACTCAGTTATCTCCTTCGGTTCTTAAATCTGAAGGAGTACCTGTTTATCGAGCAGTCCAGCATTCCCGGGAATTTGTTCTTACATTTCCAAGGGCATACCACTCTGGATTTAATTGTGGTTTCAACTGCGCTGAGGCTGTCAATGTGGCTCCTGTTGATTGGTTGGTTCATGGCCAAAATGCAGTAGAGATTTACAGCGAGCAGTGTCGCAAGACATCGATTTCCCATGACAAATTGTTATTCGGTGCAACTAAGGAAGCCATAAAGGCCCTGTGGGAGATCTCAAGTCTTGGAAAGGAAACTCCGAGAAATATGAGATGGAAAAGTGTTTGTGGGAAAGATGGAGACCTTACCAAGGCATTTCAGAGAAGGCGAAGGATGGAGAAGGAAAGGATGGATTTCCTCCCAGCCGGTTATAAGATACTGAAAATGGAGAGGGACTTTGATTGTGAAAGCGAGAGAGAATGTTGTTCTTGCTTTTATGATTTGCATGTATCTGTGGCCACCTGCAAATGTTCTCCTGACCGGTTTTCATGCCTTAAACATATACATAACCTTTGCCAATGTGCAATTGAACACAGAACTGTTCTACTCCGTTATACTCTAAATGAATTGAACACTCTGATTGAAGCATTGGAAGGGGGAATTGATGCCCTTAGCCTATGGGCTTTAGAAGACTGTCAATTCATTCCTTCTAAGCTGGATTTAGAGAGCAATATTTGCAAGGAAAATTTAAATGATTTAAAGGAAAAATCTTCTGCTTTGCCAGTAAAAGAGAAACCCAAAATAAAGGCCCCTTGCAGTTCAGGTAGTAGCATTTCTTCTGAAGTTTTCCATTCAGAGGCGCAACATGGATCACATGGCCTTGGTGACTGTGTAAAAGGCGATATTATGGTCATGACGAAAGAAGAAAATGCGGGGCAGAAGTTATATATAGATTTGAATATTAATGTCATTTCGGATGAAAATGAAAGTGGATGGCTGTTTATGTCGGACAGTATGCCTATCACAAATGTGGAAAAACAGAATTTGTCTTCTAAATCAGACGGTGATAAGTCATTGAGAATTAATCTTGCCTTTCCACATCTACCATCATCTATTTTGTCACTAAGCAGTTTGGGAACCTCAGATATAAGTACTTATTTGGTAGATCCTTTTGTTGAGGCTATAAATTTTGGATCTGTCATGTTCGGAAGGCTTTGGTGCAATAAGCAGGCAATATTTCCGAAAGGATTTAGAAGCAGAACTAAGTTTCTTAGTGTGATGGATCCGAGCAATGTGTGTACTTATGTATCAGAAGTTCTTGATGCAGGGTTGCTTGGGCCTCTATTTAAGGTTACTTTGGAGGAATATCCAAGGGTAAGTTTTGCAAGTGTCTCAGCAGATAAGTGCTGGGAAATGGTGCTTCAGAGAATAAACCAAGAAATCATACGGCACAACAGTCAACGAAAAGAAATCCCTCCGTTGCAGCCTCTGCAAGAAGAAGTCAATGGGCTTCAAATGTTTGGGTTTCTCTCTCCACATATCACTCAGGTTATCGAGGCCCTTGATCACAAGCATCAATGTGCTGAGTACTGGACCCATAAGTCTCATTCTCGGGTAAAAGAGAATGATCTCAAAAGCTCTTGTTTAGGACCGGGTTGTTGTTTGGAAGTAACAGGGGCCAAAATTTTTGGGTTCAATTTGACAAGGAAGGAAGACCATACCAATCCCTCTATTCACAAACTGCACTGCAGCAATTCACAGATTTGA 2838 42.11 MEQLAEETRQREGYSSMCTQKSNHAVESSSGSPRHRKVSARWDPYEPCRPIIDEAPVYYPTVEEFQDTLGYIAKIRTEAEHYGICRIVPPPSWNPPCPLRKKDKWEDAKFPTRIQQVDLLQNREPMRKKNRGRKRKRRKHSRTGTSRPTNPGLEATTASEAEEKFGFNSGPGFNFRDFQSYADYFKECYFGMKESKELECSEIEVNNKWVPSEEDIEGEYWRIIEQPTDEVEVYYGADLESGTFGSGFPKASSMSTEGDSDEYLKSGWNLNNFPRLPGSVLCFEESDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASFLEAAMKKHLPDLFEEQPHLLHELVTQLSPSVLKSEGVPVYRAVQHSREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEIYSEQCRKTSISHDKLLFGATKEAIKALWEISSLGKETPRNMRWKSVCGKDGDLTKAFQRRRRMEKERMDFLPAGYKILKMERDFDCESERECCSCFYDLHVSVATCKCSPDRFSCLKHIHNLCQCAIEHRTVLLRYTLNELNTLIEALEGGIDALSLWALEDCQFIPSKLDLESNICKENLNDLKEKSSALPVKEKPKIKAPCSSGSSISSEVFHSEAQHGSHGLGDCVKGDIMVMTKEENAGQKLYIDLNINVISDENESGWLFMSDSMPITNVEKQNLSSKSDGDKSLRINLAFPHLPSSILSLSSLGTSDISTYLVDPFVEAINFGSVMFGRLWCNKQAIFPKGFRSRTKFLSVMDPSNVCTYVSEVLDAGLLGPLFKVTLEEYPRVSFASVSADKCWEMVLQRINQEIIRHNSQRKEIPPLQPLQEEVNGLQMFGFLSPHITQVIEALDHKHQCAEYWTHKSHSRVKENDLKSSCLGPGCCLEVTGAKIFGFNLTRKEDHTNPSIHKLHCSNSQI 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7877660 7882863 + Conep06aG0116500.1 Cone6ag1120 440004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1120 945 Pfam F/Y rich C-terminus 803 891 IPR003889 GO:0005634(InterPro)
Cone6ag1120 945 MobiDBLite consensus disorder prediction 1 39 - -
Cone6ag1120 945 ProSiteProfiles JmjC domain profile. 262 428 IPR003347 -
Cone6ag1120 945 SMART JmjN_1 54 95 IPR003349 -
Cone6ag1120 945 MobiDBLite consensus disorder prediction 10 29 - -
Cone6ag1120 945 Pfam jmjN domain 56 89 IPR003349 -
Cone6ag1120 945 SMART cupin_9 262 428 IPR003347 -
Cone6ag1120 945 ProSiteProfiles FYR domain FYRN motif profile. 741 799 IPR003888 GO:0005634(InterPro)
Cone6ag1120 945 SUPERFAMILY Clavaminate synthase-like 230 455 - -
Cone6ag1120 945 ProSiteProfiles FYR domain FYRC motif profile. 801 891 IPR003889 GO:0005634(InterPro)
Cone6ag1120 945 Pfam C5HC2 zinc finger 518 570 IPR004198 -
Cone6ag1120 945 MobiDBLite consensus disorder prediction 127 144 - -
Cone6ag1120 945 MobiDBLite consensus disorder prediction 116 158 - -
Cone6ag1120 945 ProSiteProfiles JmjN domain profile. 55 96 IPR003349 -
Cone6ag1120 945 SMART fyrc_3 805 899 IPR003889 GO:0005634(InterPro)
Cone6ag1120 945 Pfam JmjC domain, hydroxylase 295 411 IPR003347 -
Cone6ag1120 945 SMART fyrn_3 755 799 IPR003888 GO:0005634(InterPro)
Cone6ag1120 945 Gene3D - 749 885 - -
Cone6ag1120 945 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 626 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone6ag1120 945 Pfam F/Y-rich N-terminus 752 798 IPR003888 GO:0005634(InterPro)
Cone6ag1120 945 Gene3D Cupin 40 412 - -
Cone6ag1120 945 FunFam Putative lysine-specific demethylase JMJ16 747 885 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1120 K11446 - - mdm:103446074 1062.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0643 Cone-Chr10:3087132 Cone6ag1120 Cone-Chr6:7877660 1.26E-266 dispersed
Cone17ag0624 Cone-Chr17:3515368 Cone6ag1120 Cone-Chr6:7877660 1.34E-159 dispersed
Cone6ag1120 Cone-Chr6:7877660 Cone9ag1086 Cone-Chr9:6282421 0 dispersed
Cone6ag1120 Cone-Chr6:7877660 Cone3ag0673 Cone-Chr3:3426695 4.61E-264 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0673 . 1 1213 JUMONJI Transcription Factor Family AT1G08620 54.5 0.0e+00 1268.1
Cone10ag0643 . 1 1215 JUMONJI Transcription Factor Family AT1G08620 54.3 0.0e+00 1258.4
Cone9ag1086 . 27 929 JUMONJI Transcription Factor Family AT1G30810 52.6 6.3e-257 884.4
Cone6ag1120 . 32 924 JUMONJI Transcription Factor Family AT1G30810 52.5 5.9e-255 877.9
Cone6ag1120 . 63 892 JUMONJI Transcription Factor Family AT4G20400 52.8 1.1e-249 860.5
Cone9ag1086 . 65 895 JUMONJI Transcription Factor Family AT4G20400 52.6 5.8e-248 854.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46366 PF00004 AAA 1.50E-41 CL0023 Cone TR