Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1120 ATGGAACAGTTAGCGGAAGAAACTCGACAGAGAGAGGGTTATTCTTCCATGTGCACTCAGAAAAGCAACCATGCTGTTGAATCCTCCTCTGGTAGTCCTCGACATAGAAAGGTTTCAGCCAGATGGGACCCATATGAACCATGCAGGCCTATCATTGATGAAGCTCCTGTATATTATCCCACTGTGGAGGAGTTTCAGGATACACTTGGTTACATAGCAAAGATTCGCACAGAAGCAGAACATTATGGTATATGCCGGATTGTCCCTCCCCCTTCCTGGAATCCACCTTGCCCTCTTAGGAAGAAAGATAAATGGGAAGATGCAAAGTTTCCTACTCGTATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAGGAAGAAGAACAGGGGACGGAAAAGAAAACGTAGGAAGCACTCAAGAACGGGAACAAGCAGGCCCACCAATCCTGGCTTAGAAGCTACTACTGCATCTGAGGCTGAAGAAAAGTTCGGTTTCAACTCTGGGCCAGGCTTCAATTTTCGAGATTTTCAGAGCTATGCTGACTATTTCAAGGAGTGTTATTTTGGAATGAAGGAATCTAAGGAATTAGAATGTAGTGAAATTGAGGTCAATAATAAATGGGTGCCATCTGAGGAGGATATTGAAGGTGAATACTGGCGTATAATTGAGCAACCAACTGATGAAGTTGAGGTATACTACGGAGCTGACTTGGAATCGGGAACATTTGGAAGTGGATTTCCTAAGGCATCATCTATGTCAACTGAAGGTGATTCAGATGAATATTTAAAGTCGGGTTGGAACCTTAATAACTTCCCACGCCTACCAGGTTCCGTATTGTGTTTCGAGGAAAGCGATATCTCTGGAGTGGTAGTGCCATGGCTCTATGTTGGAATGTGCTTCTCGTCATTTTGTTGGCATGTTGAGGACCACCATCTTTACTCACTAAACTATTTGCACTGGGGTGACCCAAAAGTATGGTACGGAGTTCCTGGAAGCCATGCTTCTTTTCTAGAAGCTGCAATGAAAAAGCATTTGCCCGATTTATTTGAAGAACAACCCCATTTACTTCATGAACTGGTTACTCAGTTATCTCCTTCGGTTCTTAAATCTGAAGGAGTACCTGTTTATCGAGCAGTCCAGCATTCCCGGGAATTTGTTCTTACATTTCCAAGGGCATACCACTCTGGATTTAATTGTGGTTTCAACTGCGCTGAGGCTGTCAATGTGGCTCCTGTTGATTGGTTGGTTCATGGCCAAAATGCAGTAGAGATTTACAGCGAGCAGTGTCGCAAGACATCGATTTCCCATGACAAATTGTTATTCGGTGCAACTAAGGAAGCCATAAAGGCCCTGTGGGAGATCTCAAGTCTTGGAAAGGAAACTCCGAGAAATATGAGATGGAAAAGTGTTTGTGGGAAAGATGGAGACCTTACCAAGGCATTTCAGAGAAGGCGAAGGATGGAGAAGGAAAGGATGGATTTCCTCCCAGCCGGTTATAAGATACTGAAAATGGAGAGGGACTTTGATTGTGAAAGCGAGAGAGAATGTTGTTCTTGCTTTTATGATTTGCATGTATCTGTGGCCACCTGCAAATGTTCTCCTGACCGGTTTTCATGCCTTAAACATATACATAACCTTTGCCAATGTGCAATTGAACACAGAACTGTTCTACTCCGTTATACTCTAAATGAATTGAACACTCTGATTGAAGCATTGGAAGGGGGAATTGATGCCCTTAGCCTATGGGCTTTAGAAGACTGTCAATTCATTCCTTCTAAGCTGGATTTAGAGAGCAATATTTGCAAGGAAAATTTAAATGATTTAAAGGAAAAATCTTCTGCTTTGCCAGTAAAAGAGAAACCCAAAATAAAGGCCCCTTGCAGTTCAGGTAGTAGCATTTCTTCTGAAGTTTTCCATTCAGAGGCGCAACATGGATCACATGGCCTTGGTGACTGTGTAAAAGGCGATATTATGGTCATGACGAAAGAAGAAAATGCGGGGCAGAAGTTATATATAGATTTGAATATTAATGTCATTTCGGATGAAAATGAAAGTGGATGGCTGTTTATGTCGGACAGTATGCCTATCACAAATGTGGAAAAACAGAATTTGTCTTCTAAATCAGACGGTGATAAGTCATTGAGAATTAATCTTGCCTTTCCACATCTACCATCATCTATTTTGTCACTAAGCAGTTTGGGAACCTCAGATATAAGTACTTATTTGGTAGATCCTTTTGTTGAGGCTATAAATTTTGGATCTGTCATGTTCGGAAGGCTTTGGTGCAATAAGCAGGCAATATTTCCGAAAGGATTTAGAAGCAGAACTAAGTTTCTTAGTGTGATGGATCCGAGCAATGTGTGTACTTATGTATCAGAAGTTCTTGATGCAGGGTTGCTTGGGCCTCTATTTAAGGTTACTTTGGAGGAATATCCAAGGGTAAGTTTTGCAAGTGTCTCAGCAGATAAGTGCTGGGAAATGGTGCTTCAGAGAATAAACCAAGAAATCATACGGCACAACAGTCAACGAAAAGAAATCCCTCCGTTGCAGCCTCTGCAAGAAGAAGTCAATGGGCTTCAAATGTTTGGGTTTCTCTCTCCACATATCACTCAGGTTATCGAGGCCCTTGATCACAAGCATCAATGTGCTGAGTACTGGACCCATAAGTCTCATTCTCGGGTAAAAGAGAATGATCTCAAAAGCTCTTGTTTAGGACCGGGTTGTTGTTTGGAAGTAACAGGGGCCAAAATTTTTGGGTTCAATTTGACAAGGAAGGAAGACCATACCAATCCCTCTATTCACAAACTGCACTGCAGCAATTCACAGATTTGA 2838 42.11 MEQLAEETRQREGYSSMCTQKSNHAVESSSGSPRHRKVSARWDPYEPCRPIIDEAPVYYPTVEEFQDTLGYIAKIRTEAEHYGICRIVPPPSWNPPCPLRKKDKWEDAKFPTRIQQVDLLQNREPMRKKNRGRKRKRRKHSRTGTSRPTNPGLEATTASEAEEKFGFNSGPGFNFRDFQSYADYFKECYFGMKESKELECSEIEVNNKWVPSEEDIEGEYWRIIEQPTDEVEVYYGADLESGTFGSGFPKASSMSTEGDSDEYLKSGWNLNNFPRLPGSVLCFEESDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASFLEAAMKKHLPDLFEEQPHLLHELVTQLSPSVLKSEGVPVYRAVQHSREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEIYSEQCRKTSISHDKLLFGATKEAIKALWEISSLGKETPRNMRWKSVCGKDGDLTKAFQRRRRMEKERMDFLPAGYKILKMERDFDCESERECCSCFYDLHVSVATCKCSPDRFSCLKHIHNLCQCAIEHRTVLLRYTLNELNTLIEALEGGIDALSLWALEDCQFIPSKLDLESNICKENLNDLKEKSSALPVKEKPKIKAPCSSGSSISSEVFHSEAQHGSHGLGDCVKGDIMVMTKEENAGQKLYIDLNINVISDENESGWLFMSDSMPITNVEKQNLSSKSDGDKSLRINLAFPHLPSSILSLSSLGTSDISTYLVDPFVEAINFGSVMFGRLWCNKQAIFPKGFRSRTKFLSVMDPSNVCTYVSEVLDAGLLGPLFKVTLEEYPRVSFASVSADKCWEMVLQRINQEIIRHNSQRKEIPPLQPLQEEVNGLQMFGFLSPHITQVIEALDHKHQCAEYWTHKSHSRVKENDLKSSCLGPGCCLEVTGAKIFGFNLTRKEDHTNPSIHKLHCSNSQI 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7877660 7882863 + Conep06aG0116500.1 Cone6ag1120 440004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1120 945 Pfam F/Y rich C-terminus 803 891 IPR003889 GO:0005634(InterPro)
Cone6ag1120 945 MobiDBLite consensus disorder prediction 1 39 - -
Cone6ag1120 945 ProSiteProfiles JmjC domain profile. 262 428 IPR003347 -
Cone6ag1120 945 SMART JmjN_1 54 95 IPR003349 -
Cone6ag1120 945 MobiDBLite consensus disorder prediction 10 29 - -
Cone6ag1120 945 Pfam jmjN domain 56 89 IPR003349 -
Cone6ag1120 945 SMART cupin_9 262 428 IPR003347 -
Cone6ag1120 945 ProSiteProfiles FYR domain FYRN motif profile. 741 799 IPR003888 GO:0005634(InterPro)
Cone6ag1120 945 SUPERFAMILY Clavaminate synthase-like 230 455 - -
Cone6ag1120 945 ProSiteProfiles FYR domain FYRC motif profile. 801 891 IPR003889 GO:0005634(InterPro)
Cone6ag1120 945 Pfam C5HC2 zinc finger 518 570 IPR004198 -
Cone6ag1120 945 MobiDBLite consensus disorder prediction 127 144 - -
Cone6ag1120 945 MobiDBLite consensus disorder prediction 116 158 - -
Cone6ag1120 945 ProSiteProfiles JmjN domain profile. 55 96 IPR003349 -
Cone6ag1120 945 SMART fyrc_3 805 899 IPR003889 GO:0005634(InterPro)
Cone6ag1120 945 Pfam JmjC domain, hydroxylase 295 411 IPR003347 -
Cone6ag1120 945 SMART fyrn_3 755 799 IPR003888 GO:0005634(InterPro)
Cone6ag1120 945 Gene3D - 749 885 - -
Cone6ag1120 945 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 626 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone6ag1120 945 Pfam F/Y-rich N-terminus 752 798 IPR003888 GO:0005634(InterPro)
Cone6ag1120 945 Gene3D Cupin 40 412 - -
Cone6ag1120 945 FunFam Putative lysine-specific demethylase JMJ16 747 885 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0643 Cone-Chr10:3087132 Cone6ag1120 Cone-Chr6:7877660 1.26E-266 dispersed
Cone17ag0624 Cone-Chr17:3515368 Cone6ag1120 Cone-Chr6:7877660 1.34E-159 dispersed
Cone6ag1120 Cone-Chr6:7877660 Cone9ag1086 Cone-Chr9:6282421 0 dispersed
Cone6ag1120 Cone-Chr6:7877660 Cone3ag0673 Cone-Chr3:3426695 4.61E-264 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46366 PF00004 AAA 1.50E-41 CL0023 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1120 K11446 - mdm:103446074 1062.75