Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1133 ATGAATTCTCATTCTCACGCCCCATGCGCTGCATGCAAGTTCCTACGGCGAAAATGCACCCAGGAATGCGTATTTGCCCCCTACTTCCCATCCCATCAGCCTCAAAAATTTGCCTTTGTTCATAAAGTTTACGGGGCTAGCAACGTCACGAAACTGCTCAACGATCTCAGTCCGGCACAGAGAGAAGATGCTGTGAACTCGCTCGCTTATGAGGCAGAGGCCCGCATGCGCGACCCAGTTTACGGGTGCGTCAGTTTCATCTCGGTCCTTCAAACGAAACTGAGAGAAGTCCAAAGTGAACTCCTCGATGCCAAGAAAGAGCTTGCTACCTACATCGGGCCTCAAGCTATGCTTCCCATTTTACAACCCCAATCAGGGTATGGCCCACAACAACAACAAAATTTACAATATGGCCCTCATCATCCAATAGGTCATGATCATGTCTCTTCTTACTATAACATGATGGCCGGCACCGGCACCAGCACCGGCACTAATAGGATGCAAGGAGGAGCATTGGTGATCCGTGAGCCGCATCAGGCGCATCCTAACCAACTTTTGCAGCAACAAGTATCACTACAACAACAAGAACAACAACAGCAGCAACAAATGCTTCAGGCCGCGGCTCAGCAATTCTCAGGCGGGGTTGTAATAAGAGATCAGTCTCAAGAGATGTTTTTGAATTATGAGCAGAATAAGCCACAGCAACAACAAGATGAGGTCCTGATGATGTTTAATAATGGATCAAGTGCATTAGTGATCAATCCTATGGGTGGTAGTATTTCAGATAATAGTACTGCAAGCGGGTTCAATCAATTGGCTATGAATGCCAACAATAATAATACTAGTAATAATAATCTTGGAGGTCCATTATCCCCATCTTTGGCTCTGGCGGAATATGATCAAAACCCTAGTAATTACCAGCAAGTACTCTTAGATAATCATCATCATCATCATCACCATTCAATCCATCATCAGCTGCAAGAGCACCTATTGCACCATGATCACGAATCAGCTCAAGCACATCATCGTGAGCACCAAATATTACTTGAACAGCAAGGAGAAGATGATAAAATTGTCCATCCATAA 1086 45.12 MNSHSHAPCAACKFLRRKCTQECVFAPYFPSHQPQKFAFVHKVYGASNVTKLLNDLSPAQREDAVNSLAYEAEARMRDPVYGCVSFISVLQTKLREVQSELLDAKKELATYIGPQAMLPILQPQSGYGPQQQQNLQYGPHHPIGHDHVSSYYNMMAGTGTSTGTNRMQGGALVIREPHQAHPNQLLQQQVSLQQQEQQQQQQMLQAAAQQFSGGVVIRDQSQEMFLNYEQNKPQQQQDEVLMMFNNGSSALVINPMGGSISDNSTASGFNQLAMNANNNNTSNNNLGGPLSPSLALAEYDQNPSNYQQVLLDNHHHHHHHSIHHQLQEHLLHHDHESAQAHHREHQILLEQQGEDDKIVHP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8260428 8261513 - Conep06aG0117800.1 Cone6ag1133 440017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1133 361 Coils Coil 87 107 - -
Cone6ag1133 361 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Cone6ag1133 361 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 203 - -
Cone6ag1133 361 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1133 Cone-Chr6:8260428 Cone6ag1377 Cone-Chr6:11057520 7.18E-56 dispersed
Cone5ag1559 Cone-Chr5:10842839 Cone6ag1133 Cone-Chr6:8260428 9.03E-68 transposed
Cone13ag0095 Cone-Chr13:583641 Cone6ag1133 Cone-Chr6:8260428 2.00E-22 wgd
Cone6ag1133 Cone-Chr6:8260428 Cone9ag1121 Cone-Chr9:7475993 3.10E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46368 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1133 - - - 0.0