Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1141 ATGACTTCTTCTGTGAATGATCATTCTGATAGCAGCGAAGCTGAAGAGCAGCAAAAGTATGGTGAGTCACAGATTCAATCTTCTACATCAATATCTGCAATGTCTCAGCCTGTCACTTCAACACCAATTCCATATCCAATGCCTCCACATGTTGGAGCAGGACATGCTCTGGCACCACCAGCTTATCCTTACCCAGATCCTTACTATAGAAGCATATTTGCTCCCTATGATGTTCAACCCTATCCTCCACAGCCCTATGGTGGACAACCTATGGTCCATCTGCAATTAATGGGAATTCAACAAGCCGGTGTTCCTTTGCCATCAGATGCAATTGAGGGGCCCGTTTTTGTGAATGCTAAGCAATATCACGGAATCTTGCGGCGTAGACAATCTCGTGCAAAAGCTGAATCTGAAAATAAAGCTGTCAAGTCTAGGAAGCCATACTTGCACGAATCAAGGCATTTGCATGCGCTAAGAAGAGCTAGAGGATGTGGTGGCCGGTTTCTCAATGCTAAGAAAAATGAGAACCAACACAATGACATGGCATCAGGTGAAAAATCACAATCTAATGTAAATCTCAATTCCTGTAAAAGAAGTCGTGCTTCCTTGGATAGTGGTGAATGA 624 43.59 MTSSVNDHSDSSEAEEQQKYGESQIQSSTSISAMSQPVTSTPIPYPMPPHVGAGHALAPPAYPYPDPYYRSIFAPYDVQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAIEGPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHNDMASGEKSQSNVNLNSCKRSRASLDSGE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8567072 8571713 - Conep06aG0118600.1 Cone6ag1141 440025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1141 207 Gene3D - 111 172 - -
Cone6ag1141 207 MobiDBLite consensus disorder prediction 166 207 - -
Cone6ag1141 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 MobiDBLite consensus disorder prediction 18 40 - -
Cone6ag1141 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone6ag1141 207 MobiDBLite consensus disorder prediction 175 207 - -
Cone6ag1141 207 MobiDBLite consensus disorder prediction 1 46 - -
Cone6ag1141 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 192 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0452 Cone-Chr1:4115485 Cone6ag1141 Cone-Chr6:8567072 1.72E-23 dispersed
Cone4ag0914 Cone-Chr4:7401304 Cone6ag1141 Cone-Chr6:8567072 7.78E-29 dispersed
Cone6ag1141 Cone-Chr6:8567072 Cone7ag0760 Cone-Chr7:4704469 2.06E-32 dispersed
Cone6ag1141 Cone-Chr6:8567072 Cone9ag1129 Cone-Chr9:7752033 7.16E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46370 PF00069 Pkinase 1.20E-46 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1141 K08064 - vvi:100249692 288.5