Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1141 ATGACTTCTTCTGTGAATGATCATTCTGATAGCAGCGAAGCTGAAGAGCAGCAAAAGTATGGTGAGTCACAGATTCAATCTTCTACATCAATATCTGCAATGTCTCAGCCTGTCACTTCAACACCAATTCCATATCCAATGCCTCCACATGTTGGAGCAGGACATGCTCTGGCACCACCAGCTTATCCTTACCCAGATCCTTACTATAGAAGCATATTTGCTCCCTATGATGTTCAACCCTATCCTCCACAGCCCTATGGTGGACAACCTATGGTCCATCTGCAATTAATGGGAATTCAACAAGCCGGTGTTCCTTTGCCATCAGATGCAATTGAGGGGCCCGTTTTTGTGAATGCTAAGCAATATCACGGAATCTTGCGGCGTAGACAATCTCGTGCAAAAGCTGAATCTGAAAATAAAGCTGTCAAGTCTAGGAAGCCATACTTGCACGAATCAAGGCATTTGCATGCGCTAAGAAGAGCTAGAGGATGTGGTGGCCGGTTTCTCAATGCTAAGAAAAATGAGAACCAACACAATGACATGGCATCAGGTGAAAAATCACAATCTAATGTAAATCTCAATTCCTGTAAAAGAAGTCGTGCTTCCTTGGATAGTGGTGAATGA 624 43.59 MTSSVNDHSDSSEAEEQQKYGESQIQSSTSISAMSQPVTSTPIPYPMPPHVGAGHALAPPAYPYPDPYYRSIFAPYDVQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAIEGPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHNDMASGEKSQSNVNLNSCKRSRASLDSGE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8567072 8571713 - Conep06aG0118600.1 Cone6ag1141 440025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1141 207 Gene3D - 111 172 - -
Cone6ag1141 207 MobiDBLite consensus disorder prediction 166 207 - -
Cone6ag1141 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 MobiDBLite consensus disorder prediction 18 40 - -
Cone6ag1141 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone6ag1141 207 MobiDBLite consensus disorder prediction 175 207 - -
Cone6ag1141 207 MobiDBLite consensus disorder prediction 1 46 - -
Cone6ag1141 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1141 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 192 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1141 K08064 - - vvi:100249692 288.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0452 Cone-Chr1:4115485 Cone6ag1141 Cone-Chr6:8567072 1.72E-23 dispersed
Cone4ag0914 Cone-Chr4:7401304 Cone6ag1141 Cone-Chr6:8567072 7.78E-29 dispersed
Cone6ag1141 Cone-Chr6:8567072 Cone7ag0760 Cone-Chr7:4704469 2.06E-32 dispersed
Cone6ag1141 Cone-Chr6:8567072 Cone9ag1129 Cone-Chr9:7752033 7.16E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1141 Cone9ag1129 . . . . Blo08g00259 . . . . . Bma07g00447 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone18ag0101 . 23 274 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.3 1.2e-55 214.2
Cone11ag1494 . 1 280 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 4.6e-55 212.2
Cone5ag1448 . 18 238 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.6 7.9e-47 184.9
Cone11ag1494 . 60 344 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.7 4.5e-51 199.1
Cone9ag1129 . 62 178 CCAAT-HAP2 Transcription Factor Family AT2G34720 64.5 1.5e-37 153.3
Cone6ag1141 . 62 178 CCAAT-HAP2 Transcription Factor Family AT2G34720 66.7 3.4e-37 152.1
Cone9ag1129 . 1 202 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.9 4.5e-49 191.8
Cone6ag1141 . 1 202 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.0 1.5e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46370 PF00069 Pkinase 1.20E-46 CL0016 Cone TF