Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag1141 | ATGACTTCTTCTGTGAATGATCATTCTGATAGCAGCGAAGCTGAAGAGCAGCAAAAGTATGGTGAGTCACAGATTCAATCTTCTACATCAATATCTGCAATGTCTCAGCCTGTCACTTCAACACCAATTCCATATCCAATGCCTCCACATGTTGGAGCAGGACATGCTCTGGCACCACCAGCTTATCCTTACCCAGATCCTTACTATAGAAGCATATTTGCTCCCTATGATGTTCAACCCTATCCTCCACAGCCCTATGGTGGACAACCTATGGTCCATCTGCAATTAATGGGAATTCAACAAGCCGGTGTTCCTTTGCCATCAGATGCAATTGAGGGGCCCGTTTTTGTGAATGCTAAGCAATATCACGGAATCTTGCGGCGTAGACAATCTCGTGCAAAAGCTGAATCTGAAAATAAAGCTGTCAAGTCTAGGAAGCCATACTTGCACGAATCAAGGCATTTGCATGCGCTAAGAAGAGCTAGAGGATGTGGTGGCCGGTTTCTCAATGCTAAGAAAAATGAGAACCAACACAATGACATGGCATCAGGTGAAAAATCACAATCTAATGTAAATCTCAATTCCTGTAAAAGAAGTCGTGCTTCCTTGGATAGTGGTGAATGA | 624 | 43.59 | MTSSVNDHSDSSEAEEQQKYGESQIQSSTSISAMSQPVTSTPIPYPMPPHVGAGHALAPPAYPYPDPYYRSIFAPYDVQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAIEGPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHNDMASGEKSQSNVNLNSCKRSRASLDSGE | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8567072 | 8571713 | - | Conep06aG0118600.1 | Cone6ag1141 | 440025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag1141 | 207 | Gene3D | - | 111 | 172 | - | - | |
Cone6ag1141 | 207 | MobiDBLite | consensus disorder prediction | 166 | 207 | - | - | |
Cone6ag1141 | 207 | ProSiteProfiles | NF-YA/HAP2 family profile. | 111 | 171 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag1141 | 207 | SMART | cbf3 | 110 | 171 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag1141 | 207 | MobiDBLite | consensus disorder prediction | 18 | 40 | - | - | |
Cone6ag1141 | 207 | PRINTS | CCAAT-binding transcription factor subunit B signature | 114 | 136 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag1141 | 207 | PRINTS | CCAAT-binding transcription factor subunit B signature | 145 | 168 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag1141 | 207 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 116 | 136 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cone6ag1141 | 207 | MobiDBLite | consensus disorder prediction | 175 | 207 | - | - | |
Cone6ag1141 | 207 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cone6ag1141 | 207 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 114 | 168 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag1141 | 207 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 8 | 192 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0452 | Cone-Chr1:4115485 | Cone6ag1141 | Cone-Chr6:8567072 | 1.72E-23 | dispersed | |
Cone4ag0914 | Cone-Chr4:7401304 | Cone6ag1141 | Cone-Chr6:8567072 | 7.78E-29 | dispersed | |
Cone6ag1141 | Cone-Chr6:8567072 | Cone7ag0760 | Cone-Chr7:4704469 | 2.06E-32 | dispersed | |
Cone6ag1141 | Cone-Chr6:8567072 | Cone9ag1129 | Cone-Chr9:7752033 | 7.16E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46370 | PF00069 | Pkinase | 1.20E-46 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag1141 | K08064 | - | vvi:100249692 | 288.5 |