Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1167 ATGAGGGTAAAAAGAGGGAGTGGTGATCTGGTGTATGAGGGAGGGATAGAATCTGAGTCAAAGCAGCACAAAATTACTCTGCAGTCATCGCCTTCTGCTTTTCGCCCTGCTTCTGAAGATGGTCATCTTCCCGGATTTAATTATGGTGATGATGAAGATGAGGAAGATTATGATAAGAAAGACACAAATAATGAGTATAGAGTTGAAAAAAATGAGCATAGATTTACTGAAGAAGAGGATGGTGATGATGATGATGGGTCAGTTGAACAAGATCATGGTCTAGCGAAGAAAAGCAGGGAGATAGAGGTTCGCAAGGACTGTCCTTATCTTGACACTGTTAATCGCCAGGTTTTGGATTTTGATTTTGAGAAGTTTTGTTCTGTCTCTTTGTCAAATTTGAACGTCTATGCCTGCTTGGTATGTGGCAAGTATTATCAAGGGCGGGGGAGGAAATCCCATGCTTATACTCATAGTCTTGAAGCAGGTCACCATGTCTATATCAATCTTCAGACCGAGAAAGTTTATTGCCTCCCTGATGGATATGAGATCAATGATCCTTCCTTAGATGATATTCGGCATGTTCTGAACCCAAGGTTTATCAAGGAGCAAGTTCAACAGCTTGACAAGAACAGGCAATGGTCTAGGGCGCTTGATGGCTCTGACTATCTCCCAGGAATGGTAGGGCTGAACAACATCAAGGAGACAGATTTCGTAAATGTTACAATTCAATCTTTAATGAGAGTTACTCCATTACGGAACTTTTTCCTTATCCCCGAGAACTTTCAGCACTGCAAATCTCCACTTGTTCAACGGTTTGGAGAACTTACACGGAAGGTTTGGCATGCTCGGAACTTTAAGGGACAGGTTAGTCCACATGAGTTTCTACAAGCAGTTATGAAAGCTAGTAAAAAACGATTTCGAATAGGTGCACAATCTGATCCTGTAGAATTTATGTCGTGGCTTCTTAATACACTGCACACAGATCTTCGAACTTCCAAGAAAAGTAAATCCATAATCTATGAGTGTTTTCAGGGGGAATTGGAAGTTGTGAAAGAGATTCACTCTAAAGCATTCCATGAGAAGAAAGAAAATGGTGATGAGTTGAATGCTCTGGTAGAAGGTGGAACGGAACATAGGAATGTTGTGGCAGAAACTTCCAGAATGCCATTTTTAATGCTGGGATTGGATTTGCCGCCGCCACCTCTTTTCAAAGACATTATGGAGAAAAACATTATACCCCAGGTCCCGCTCTTCAATATCCTAAAGAAATTTGATGGTGAAACTGTCACCGAGGTAGTCCGTCCTCGTTTGGCCAGGATGCGGTACAGAGTCACCAGGTTGCCTAAATACATGATCCTCCACATGCGCCGATTTACAAAAAACAACTTTTTCGTGGAGAAGAACCCCACATTAGTCAACTTTCCTGTGAAGAATCTCGAATTGAAGGATTACATTCCGTTGCCCACCCCAAAAGAGAATGAGAAATTGCGGTCAAAGTATGATTTGATTGCTAATATAGTTCATGATGGTAAACCTGATGAAGGGTTCTATAGGGTATTTGTGCAGAGAAAGTCGGAAGAATTATGGTATGAAATGCAGGATTTGCATGTCTCAGAAACACTACCTCAAATGGTTGCTCTCTCTGAAGCATATATGCAAATATATGAGCAGCATCAGTAG 1680 41.43 MRVKRGSGDLVYEGGIESESKQHKITLQSSPSAFRPASEDGHLPGFNYGDDEDEEDYDKKDTNNEYRVEKNEHRFTEEEDGDDDDGSVEQDHGLAKKSREIEVRKDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGRKSHAYTHSLEAGHHVYINLQTEKVYCLPDGYEINDPSLDDIRHVLNPRFIKEQVQQLDKNRQWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENFQHCKSPLVQRFGELTRKVWHARNFKGQVSPHEFLQAVMKASKKRFRIGAQSDPVEFMSWLLNTLHTDLRTSKKSKSIIYECFQGELEVVKEIHSKAFHEKKENGDELNALVEGGTEHRNVVAETSRMPFLMLGLDLPPPPLFKDIMEKNIIPQVPLFNILKKFDGETVTEVVRPRLARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPDEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSEAYMQIYEQHQ 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8934592 8940705 - Conep06aG0121200.1 Cone6ag1167 440051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1167 559 Pfam Zn-finger in ubiquitin-hydrolases and other protein 126 187 IPR001607 GO:0008270(InterPro)
Cone6ag1167 559 MobiDBLite consensus disorder prediction 60 77 - -
Cone6ag1167 559 MobiDBLite consensus disorder prediction 1 97 - -
Cone6ag1167 559 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 227 558 IPR028889 -
Cone6ag1167 559 CDD Peptidase_C19M 108 556 IPR033809 GO:0000245(InterPro)|GO:0006397(InterPro)
Cone6ag1167 559 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 63 557 IPR050185 -
Cone6ag1167 559 ProSiteProfiles Zinc finger UBP-type profile. 105 202 IPR001607 GO:0008270(InterPro)
Cone6ag1167 559 Coils Coil 59 79 - -
Cone6ag1167 559 SUPERFAMILY Cysteine proteinases 219 557 IPR038765 -
Cone6ag1167 559 SUPERFAMILY RING/U-box 105 199 - -
Cone6ag1167 559 SMART Zf_UBP_1 125 174 IPR001607 GO:0008270(InterPro)
Cone6ag1167 559 MobiDBLite consensus disorder prediction 21 35 - -
Cone6ag1167 559 FunFam U4/U6.U5 tri-snRNP-associated protein 2 107 195 - -
Cone6ag1167 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 195 IPR013083 -
Cone6ag1167 559 Pfam Ubiquitin carboxyl-terminal hydrolase 227 555 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cone6ag1167 559 Gene3D Cysteine proteinases 196 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1167 K12847 - - csv:101218920 904.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0470 Cone-Chr5:1992370 Cone6ag1167 Cone-Chr6:8934592 2.18E-06 dispersed
Cone6ag1167 Cone-Chr6:8934592 Cone9ag1149 Cone-Chr9:8143271 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1786 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1167 Cone9ag1149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004357 2 4 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 2 1 1 2 1 2 1 1 1 1 1 42