Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1226 ATGGCTGAAAACAAATTTCTGAGAAAGATGATCATCATAATCTGGCTATTGCTCCTATCACTTTTACAAACCGGCTATTCATCCACAGAGCCTGATGTAGAAGGTGAAGCTTTAAAGGATTTTTTACTAGACCTCAATGATTCCAATCACCAAATAACAGATTGGAATTATCATTTTGTTAGCCCTTGCTTTAGCTGGTCCCACGTAACTTGTAGAAACGGAAAGGTCATATCGTTGAGCTTGGCTTCAAACGGATTTACAGGAAGGCTTTCATCTTCAATAACCAAACTCAAATTCTTGGCTAACTTGGATTTGCAGAATAACAAATTATCGGGTAATTTACCGGATTATCTTGCCAATATGACTAATCTCCAGAACTTAAATCTTGCTAATAATAATTTCTATGGCTCTATACCTTCCACTTGGGGGCAACTTTCTAGTCTAAAACATCTGGTGTTGAAGGGGAACCACCTATCTGGGTCTGTTCCAGATTCGATTACAAACATCTCTGGACTTACAGAGCTGGATCTTTCTGATAATAACTTGACAGGAAGAATTCCAGTTCAGCTGTTTTCAATTCCTACATTCAATTTTACAGGAACACAATTGATTTGCGGCTCTAGCTTGGAGAGACCATGTCTTCCCGGCTCTCCTCATTCTGTGTCTACACACAAATCAAAAGTTGGAGTAATTGCAAGTTCTCTAGGTTGTGGTGTCTTTATCCTCCTCTTGATTGGGGCCATCTTTACATACCGATGTCATTATGCTAACAAGTTTAAACAGGATATATTCGTTGATGTGGCGGGTGAAGATGATCGTAAAATTTCTTATGGGCAACTTAGAAAGTTCTCATGGCGTGAGATCCAACATGCTACGGACAACTTTAGTGAAACCAACATTATAGGACAAGGCGGTTTCGGAAAGGTGTATAGAGGTGTCCTCTCTGATAACACCAAAGTTGCCGTGAAACGCCTCACCGACTATAATAGCCCAGGTGGAGAGGCTGCATTCTTAAGAGAAGTTCAACTTATAAGTGTAGCTGTTCATCGGAATCTCCTCAGATTAATTGGGTTTTGCACCACCTCTTCCGAGAGAGTCCTCGTTTATCCATTCATGCAAAATCTTAGTGTTGCATATCGCTTGCGAGATTTAAAACCAGGGCAAAAAGGTTTGGACTGGCCCACGAGAAAACGGATCGCTTTTGGAACAGCCCATGGACTGGAATATTTACATGAGCATTGCAATCCGAAGATCATACACCGTGATCTTAAGGCAGCAAATATCTTATTAGACGAGGATTTCGAAGCTGTTCTTGGAGATTTCGGCCTGGCAAAGTTGGTCGATACAAACTTGACTCATATCACCACTCAAGTGCGTGGAACAATGGGCCATATTGCCCCGGAATACTTGTCCACTGGAAAGTCATCGGAAAAAACAGATGTTTTCGGTTATGGTATAACTCTTCTTGAACTTGTCACTGGTCAAAGAGCAATAGATTTATCCCGTCTTGATGAGGAGGAGGACGTGCTTCTTCTGGATCATATCAAGAAGCTGCTGAGAGAAAAGAGGCTTGGAGACACTGTGGATAGGAACTTGAAGAGTTATGATATAAAAGAAGTGGAGACAATTGTTCAAGTCGCATTGCTTTGTACTCAGAGTTCACCGGAAGATCGTCCGACAATGGCAGAAGTTGTAGAATTGCTGCAGGGAGTAGGTTTGAGTGAGAGATGGGAAGAATGGGTTCAACTTGAAGAGGTAAGGGAACAAGAAGTCTCACTCTTGTCTCACCAGTTTCCTTGGGCTGAAGAATCAACTCATGATCAAGAAGCTATACAATTGTTCAAAGCAAGATGA 1854 41.53 MAENKFLRKMIIIIWLLLLSLLQTGYSSTEPDVEGEALKDFLLDLNDSNHQITDWNYHFVSPCFSWSHVTCRNGKVISLSLASNGFTGRLSSSITKLKFLANLDLQNNKLSGNLPDYLANMTNLQNLNLANNNFYGSIPSTWGQLSSLKHLVLKGNHLSGSVPDSITNISGLTELDLSDNNLTGRIPVQLFSIPTFNFTGTQLICGSSLERPCLPGSPHSVSTHKSKVGVIASSLGCGVFILLLIGAIFTYRCHYANKFKQDIFVDVAGEDDRKISYGQLRKFSWREIQHATDNFSETNIIGQGGFGKVYRGVLSDNTKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTSSERVLVYPFMQNLSVAYRLRDLKPGQKGLDWPTRKRIAFGTAHGLEYLHEHCNPKIIHRDLKAANILLDEDFEAVLGDFGLAKLVDTNLTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLDEEEDVLLLDHIKKLLREKRLGDTVDRNLKSYDIKEVETIVQVALLCTQSSPEDRPTMAEVVELLQGVGLSERWEEWVQLEEVREQEVSLLSHQFPWAEESTHDQEAIQLFKAR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9656277 9660522 + Conep06aG0127100.1 Cone6ag1226 440110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1226 617 FunFam Leucine-rich repeat receptor-like protein kinase 31 188 - -
Cone6ag1226 617 Gene3D Transferase(Phosphotransferase) domain 1 372 588 - -
Cone6ag1226 617 FunFam Somatic embryogenesis receptor-like kinase 1 372 588 - -
Cone6ag1226 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1226 617 SUPERFAMILY L domain-like 38 196 - -
Cone6ag1226 617 FunFam Somatic embryogenesis receptor kinase 1 264 371 - -
Cone6ag1226 617 Gene3D Ribonuclease Inhibitor 31 215 IPR032675 -
Cone6ag1226 617 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Cone6ag1226 617 SUPERFAMILY Protein kinase-like (PK-like) 275 568 IPR011009 -
Cone6ag1226 617 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Cone6ag1226 617 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515(InterPro)
Cone6ag1226 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 590 - -
Cone6ag1226 617 Pfam Protein kinase domain 297 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1226 617 SMART serkin_6 295 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1226 617 ProSiteProfiles Protein kinase domain profile. 295 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1226 617 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
Cone6ag1226 617 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1226 Cone-Chr6:9656277 Cone7ag1426 Cone-Chr7:10133383 5.70E-148 dispersed
Cone6ag1226 Cone-Chr6:9656277 Cone8ag0224 Cone-Chr8:1234321 1.23E-209 transposed
Cone6ag1226 Cone-Chr6:9656277 Cone12ag0232 Cone-Chr12:1231244 1.69E-209 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82955 PF00560 LRR_1 0.37 CL0022 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1226 - - - 0.0