Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1233 ATGGGAGATGGCACCACTACCGGCAGCAATAGAAGTCTTGCCTCAGCAGCCTCTTACAAAAGCAATAGCAATGGCGGAAGCAACAAGCCGGAGTGGTTGCAGCAGTACGATCTGATAGGGAAGATCGGAGAAGGCACTTACGGCCTTGTATTTCTCGCTAAAGTTAAGCATTCCATCAATCGTGGAAAGTCCATCGCTATCAAGAAGTTCAAACAATCCAAGGATGGCGACGGTGTCTCCCCTACAGCTATTCGCGAAATCATGCTACTGCGGGAAATATCTCATGAGAATGTTGTCAAGCTTGTGAACGTTCATATCAATCATACAGATATGTCTTTATACCTGGCTTTTGATTATGCTGAACATGATCTTTATGAAATTATTAGACATCATCGGGACAAGGTTAACCAAACCATCAATCAGTACACCGTTAAATCATTGCTATGGCAACTGCTTAATGGACTGAATTATCTCCACAGTAATTGGATTATACACCGTGATCTAAAGCCATCAAATATTTTGGTTATGGGCGAGGGAGAAGAACAAGGTGTTGTTAAAATAGGTGATTTTGGACTTGCAAGAGTATACCAAGCTCCCTTGAAGCCGCTATATGAAAATGGGGTTGTTGTGACGATTTGGTATCGTGCACCTGAGCTGCTTCTTGGAGCAAAGCATTATACAAGTGCAGTCGATATATGGGCTGTTGGGTGTATTTTTGCTGAGCTTTTGACATTGAAGCCACTATTTCAAGGGGCAGAAGTTAAAGGGACAGTGAATCCTTTCCAGCTTGATCAGCTTGATAAGATATTCAAAGTCTTAGGCCATCCAACCCTAGAAAAGTGGCCAACACTAGCAAATCTTCCACATTGGCAACAAGACATACAGCATATACAGGGTCACAAGTATGATAATGCTGGGCTCTATAGTGTTGTTCACCTTAATCCAAAAAGTCCTGCATATGATCTCCTATCTAAGATGCTCGAATATGATCCACGGAAGCGTATAACAACAGCACAAGCCCTGGAGCATGAGTACTTTCGTCTTGAACCTCTTCCAGGGCACAATTCACTTGTGCCCAACCAACCTGGGGAGAAACTCGTCAATTATCCTACCCGTCCTGTGGACACAACCACAGATTTTGAGGGAGCAACTAGCCTCCAACCTCCACCAACGGTGTCATCAGGGAATCCAGTTCCTGGAAACATACAGGGTACTCATGTGGTAGCAAATAGATTGGTCCCTCCCGTAAGTGGAATGCAAAGGATGCAACCTCCAGGCATACCAGCTTATAATCTTGCATCTCAGCCTGGTATGGGTGGGCCAATGAATCCTACTGGCATTCCAATGCAGCGAGGTGTTAATGCCCAAGCTCATCAACAGCAACAGTTGAGGAGGAAAGACCCAGGGATGGGGGGGATGACTGGATACCATCCACAACAGAAATCCAGACGGTTCTGA 1458 44.92 MGDGTTTGSNRSLASAASYKSNSNGGSNKPEWLQQYDLIGKIGEGTYGLVFLAKVKHSINRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQTINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIGDFGLARVYQAPLKPLYENGVVVTIWYRAPELLLGAKHYTSAVDIWAVGCIFAELLTLKPLFQGAEVKGTVNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDIQHIQGHKYDNAGLYSVVHLNPKSPAYDLLSKMLEYDPRKRITTAQALEHEYFRLEPLPGHNSLVPNQPGEKLVNYPTRPVDTTTDFEGATSLQPPPTVSSGNPVPGNIQGTHVVANRLVPPVSGMQRMQPPGIPAYNLASQPGMGGPMNPTGIPMQRGVNAQAHQQQQLRRKDPGMGGMTGYHPQQKSRRF 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9808097 9815107 - Conep06aG0128100.1 Cone6ag1233 440117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1233 485 ProSiteProfiles Protein kinase domain profile. 36 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1233 485 CDD STKc_CDK8_like 35 346 - -
Cone6ag1233 485 ProSitePatterns Protein kinases ATP-binding region signature. 42 69 IPR017441 GO:0005524(InterPro)
Cone6ag1233 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1233 485 Gene3D Phosphorylase Kinase; domain 1 21 118 - -
Cone6ag1233 485 MobiDBLite consensus disorder prediction 1 26 - -
Cone6ag1233 485 MobiDBLite consensus disorder prediction 449 463 - -
Cone6ag1233 485 Gene3D Transferase(Phosphotransferase) domain 1 119 358 - -
Cone6ag1233 485 SMART serkin_6 36 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1233 485 MobiDBLite consensus disorder prediction 447 485 - -
Cone6ag1233 485 SUPERFAMILY Protein kinase-like (PK-like) 31 347 IPR011009 -
Cone6ag1233 485 FunFam Cyclin-dependent kinase e-1 24 119 - -
Cone6ag1233 485 PANTHER CELL DIVISION PROTEIN KINASE 35 346 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cone6ag1233 485 Pfam Protein kinase domain 36 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1233 485 FunFam Putative cyclin-dependent kinase E-1 120 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0307 Cone-Chr2:1571231 Cone6ag1233 Cone-Chr6:9808097 6.24E-35 dispersed
Cone6ag1233 Cone-Chr6:9808097 Cone8ag0731 Cone-Chr8:7347584 2.69E-73 dispersed
Cone6ag1233 Cone-Chr6:9808097 Cone9ag1212 Cone-Chr9:8784788 5.29e-318 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82956 PF00069 Pkinase 2.60E-32 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1233 K02208 - csv:101203984 797.734