Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1263 ATGGATTCGAGCCTTGTGACCCCTCCTCCTCCATTGATAGATCACTTAAAAGATGATGAGAAGGGAGTTTTCATTTTCGACTCGAATTTGCTTGAAAAACAATCCAAATTACCAAACCAGTTCATTTGGCCTCTTGCAGACCTAATACACAGCACCCCTAGTGAAGAAGAAGAGCTTAAAGAACCACTTATAGACTTAGGTGGTTTTAGAAGAGGTGATGAAGTGGAAACCGCCCAAGCTGCCGAGCTCATCCGGTCAGCTTGCTTGAACCATGGCTTCTTCCAAGTGACCAACCATGGAATTGACCAGGCTCTCATTTATAAAGCTTACAACGAAATTGATGCTATTTTCAAGATGCCTGTTGACAAGAAACTCAGCATTAAGAAAAAGCTGGGTAGTGTTTCGGGTTATTCCGGCGCCCATACGGATCGTTATTCTTCCAAGTTGCCTTGGAAAGAGACATTCTCTTTTGAATTCCATGGAAATGATGGTGAAAATCATGTTGTTGTTGACTACTTTCAATCCTTAGGAGATGATTTTGAGCATACAGGATGGGTGTACCAGAAATACTGTGAAGCCATGAACCAAATAGCTTTGGACATCATGGAGCTTTTGGCTATTAGTGTGGGAGTTGACCGACTTCTGTACCGCAAATTCTTTGAAGATGGGAGGTCAATAATGAGATGCAATTACTATCCGCCTTGTCAGAATTCAGGCCTTGCCCTCGGCACAGGCCCTCATAGCGACCCAACTTCATTGACTATTCTTCATCAAGATCAAGTTGGTGGCCTTCAGGTTTTTGCTGATAATAAATGGAAATCTGTTCGACCTCGCCCTGATGCTTTAGTTGTCAATATTGGCGACACTTTCAAAGCGTTATGTAATGGGAGGTACAAGAGCTGCCTGCATAGGGCAGTGGTGAACAGGAACAAAGAGAGAAGATCATTGGTTTTGTTCGTGTGCCCTAGAGAGGACAGAGTGGTGAGACCTCCAGAAGATCTCATTTCTGAAGATGTGCCAAGAAAGTACCCTGATTTTACTTGGTCACAGTTGCTTGAATTTACCCAAAAGCATTATAGAGCTGATGTTTCAACCCTTCAAAGCTTCATCAACTGGCTTTCCTCTTCAAAAGTCGATTGA 1140 43.07 MDSSLVTPPPPLIDHLKDDEKGVFIFDSNLLEKQSKLPNQFIWPLADLIHSTPSEEEELKEPLIDLGGFRRGDEVETAQAAELIRSACLNHGFFQVTNHGIDQALIYKAYNEIDAIFKMPVDKKLSIKKKLGSVSGYSGAHTDRYSSKLPWKETFSFEFHGNDGENHVVVDYFQSLGDDFEHTGWVYQKYCEAMNQIALDIMELLAISVGVDRLLYRKFFEDGRSIMRCNYYPPCQNSGLALGTGPHSDPTSLTILHQDQVGGLQVFADNKWKSVRPRPDALVVNIGDTFKALCNGRYKSCLHRAVVNRNKERRSLVLFVCPREDRVVRPPEDLISEDVPRKYPDFTWSQLLEFTQKHYRADVSTLQSFINWLSSSKVD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10097720 10100625 - Conep06aG0131100.1 Cone6ag1263 440147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1263 379 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 223 322 IPR005123 -
Cone6ag1263 379 FunFam Gibberellin 20 oxidase 2 28 360 - -
Cone6ag1263 379 SUPERFAMILY Clavaminate synthase-like 30 362 - -
Cone6ag1263 379 PRINTS Isopenicillin N synthase signature 247 268 - -
Cone6ag1263 379 PRINTS Isopenicillin N synthase signature 84 101 - -
Cone6ag1263 379 PRINTS Isopenicillin N synthase signature 310 328 - -
Cone6ag1263 379 Gene3D - 26 354 IPR027443 -
Cone6ag1263 379 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 38 352 IPR050231 GO:0009416(PANTHER)|GO:0009686(PANTHER)|GO:0009826(PANTHER)|GO:0009908(PANTHER)|GO:0016706(PANTHER)|GO:0045544(PANTHER)
Cone6ag1263 379 Pfam non-haem dioxygenase in morphine synthesis N-terminal 62 162 IPR026992 -
Cone6ag1263 379 Pfam 2OG-Fe(II) oxygenase superfamily 225 322 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1263 K05282 - - rcu:8270189 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0828 Cone-Chr5:3551270 Cone6ag1263 Cone-Chr6:10097720 1.12E-126 dispersed
Cone5ag0829 Cone-Chr5:3558291 Cone6ag1263 Cone-Chr6:10097720 4.90E-139 dispersed
Cone6ag1263 Cone-Chr6:10097720 Cone8ag1162 Cone-Chr8:10072726 2.18E-49 dispersed
Cone6ag1263 Cone-Chr6:10097720 Cone14ag0128 Cone-Chr14:591608 4.73E-139 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1330 . . . . . . . . . . Cma03g01109 Cma07g00811 Car03g01002 Car07g00798 . Cpe19g00512 Cpe10g00323 . . . . . . . Cla01g01490 Cam01g1558 Cec04g1205 Cco04g1272 Clacu01g1584 Cmu01g1473 Cre04g1154 . . Cone6ag1263 . Lsi01g01170 . . Cme08g01138 . . . . . . . . . Cmo03g01099 Cmo07g00841 . . . . . . . . . . . . . . . . . . . . . Csa06g02740 Chy02g01095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36