Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1270 ATGAGTCTTATGAGACGACACTGTTGGCTGAAAGCAGTACCCAAATTCCCAAATTCGATTTCAAAACCCAAGCCTTGTTCTCTCTTTTTCTCCAAAAGGCTGTTCTCTCCTTCTTCTTCTTCTTCTCTCTCAACTGTTTCGCTTCCAGTTTGCTCAATGTCTTATGAAAAAGAGCTCGTCGCGGCAAAGAAAGCCGCCTCCCTTGCTGCTCGTCTCTGTCAGAAAGTGCAAAAGGCCCTCCTCCAATCAGATGTCCAATCAAAGTCGGATAGAAGTCCGGTCACTGTTGCAGATTATGGTTCACAAGCTCTAGTTAGTTTCATTCTTGAGAAAGAACTTCCTTCCGGATCATTTTCTTTGTTGGCTGAAGAGGATTCAGGAGATCTTCGCAAAGAAAGTGGAAGGGAAACATTACAGCGCATAACAGACCTTGTTAATGAAACTCTTTCCAATGATGGATCATATAGTGCTTCTACCTTAACTGAAGAAGACATTCTTCGTGCGATTGATAATGGCAGATCTGAAGGTGGTCCTAATGGTCAACACTGGGTTTTGGATCCAATTGATGGTACAAAGGGGTTCTTAAGAGGGGACCAATATGCTATAGCCCTAGCATTGCTTGATGAAGGAAAAGTAGTATTGGGTGTCCTCGGTTGTCCAAATCTCCCCTTGGAACCCATTAGAAGTAATGACCAGCATTCTCTCCACGGTGAAATGGGTTGCCTTTTCTTTGCTAGAATCGGTACAGGAACATTTATGCAGAAATTGAATAATGATTCTTCATCAACTAAGGTGCATGTTAGTGCTATAGATAATCCCGAAGAAGCATCGTTCTTTGAATCCTATGAAGCAGCTCACTCTTTGCATGACTTATCTAGCTCCATTGCAAAAAAACTTGGCGTGAAAGCGGCACCTGTCCGGATTGATAGCCAGGCAAAATATGGAGCTCTTTCAAGAGGAGATGGAGTGATATATCTTCGATTCCCACATGAAGGATACAGAGAAAAAATATGGGACCATGCTGCTGGATGTATTGTTGTTACAGAAGCTGGAGGGGTGGTGACAGATGCTGCAGGAAACCCATTGGACTTTTCGAAAGGAAGATTCCTTGATCTTTATTCGGGTATCATTGTCACCAACCAGAAGCTCATGCCTTCCCTTTTGAAGGCCGTTAAGGAATCCCTTGACGAGAAAGCTTCATCGCTTTGA 1209 43.34 MSLMRRHCWLKAVPKFPNSISKPKPCSLFFSKRLFSPSSSSSLSTVSLPVCSMSYEKELVAAKKAASLAARLCQKVQKALLQSDVQSKSDRSPVTVADYGSQALVSFILEKELPSGSFSLLAEEDSGDLRKESGRETLQRITDLVNETLSNDGSYSASTLTEEDILRAIDNGRSEGGPNGQHWVLDPIDGTKGFLRGDQYAIALALLDEGKVVLGVLGCPNLPLEPIRSNDQHSLHGEMGCLFFARIGTGTFMQKLNNDSSSTKVHVSAIDNPEEASFFESYEAAHSLHDLSSSIAKKLGVKAAPVRIDSQAKYGALSRGDGVIYLRFPHEGYREKIWDHAAGCIVVTEAGGVVTDAAGNPLDFSKGRFLDLYSGIIVTNQKLMPSLLKAVKESLDEKASSL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10147510 10150823 - Conep06aG0131800.1 Cone6ag1270 440154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1270 402 FunFam PAP-specific phosphatase HAL2-like 266 397 - -
Cone6ag1270 402 CDD PAP_phosphatase 71 393 - -
Cone6ag1270 402 FunFam SAL1 phosphatase 53 265 - -
Cone6ag1270 402 Pfam Inositol monophosphatase family 90 394 IPR000760 -
Cone6ag1270 402 SUPERFAMILY Carbohydrate phosphatase 55 396 - -
Cone6ag1270 402 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 54 398 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Cone6ag1270 402 PRINTS Inositol monophosphatase superfamily signature 335 359 IPR000760 -
Cone6ag1270 402 PRINTS Inositol monophosphatase superfamily signature 92 112 IPR000760 -
Cone6ag1270 402 PANTHER PHOSPHATASE 51 396 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Cone6ag1270 402 ProSitePatterns Inositol monophosphatase family signature 2. 338 352 IPR020550 GO:0046854(InterPro)
Cone6ag1270 402 ProSitePatterns Inositol monophosphatase family signature 1. 183 196 IPR020583 -
Cone6ag1270 402 Gene3D - 53 265 - -
Cone6ag1270 402 Gene3D - 266 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1270 K15422 - - csv:101204881 581.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0123 Cone-Chr1:682026 Cone6ag1270 Cone-Chr6:10147510 5.40E-47 dispersed
Cone5ag1743 Cone-Chr5:12402524 Cone6ag1270 Cone-Chr6:10147510 5.43E-35 dispersed
Cone6ag1059 Cone-Chr6:6187772 Cone6ag1270 Cone-Chr6:10147510 1.53E-73 dispersed
Cone6ag1270 Cone-Chr6:10147510 Cone9ag1053 Cone-Chr9:5720235 7.11E-80 dispersed
Cone6ag1270 Cone-Chr6:10147510 Cone6ag0120 Cone-Chr6:577174 1.22E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32