Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1271 ATGGCTCTACCAGCATCAGACAGTAGTCTTCCAAATAATACCGAACCAATAGTATGTTATGCGCCAAACATGATTACGACGAATGGGATATGGCAGGGCGACAACCCTTTGGATTATTCGCTACCTCTCTTTATTCTTCAGTTGAGCATGATCGTTATTCTCACTCGCATTCTTGTTTTCATCCTCAAACCCTTACGTCAACCCCTTGTCATCTCCGAAATTCTGGGAGGAGTAATCTTAGGCCCTTCGGTACTTGGCCGCAACGCAAAATTCGCCGACACGGTTTTCCCTCTAAGAAGTGTAATGGTCTTAGAAACAATGGCAAACATCGGTCTCCTTTACTTCCTCTTCTTAATCGGAGTGGAAATGGACATTACGGTCATTAAACGCACCGGAAAAAAGGCCTTGGCGATCGCAATTGGAGGCATGGTCTTACCTTTCACAATAGGGGCATCTTTCTCCTTGGTCATGCACAAAAAAGACCCGAATATGAACGAAGCCACATTTGTCCTCTTTCTAGGTGTAGCACTTTCCGTCACGGCTTTTCCCGTGCTAGCAAGAATTCTAGCTGAGCTTAAACTCATAAACACAGAGCTGGGGAGAATGGCCATGTCAACGGCTCTTATTAACGATATAACAGCTTGGGTTCTTCTAGCCCTAGCCATAACTCTAGCCGAGAATCACAAGGCTTCAGCAGCTACAATATGGGTGATTTTATCATGCATAGGGTTCATTTGCGTTTGCTTTTTCGTGGTTCGGCCGTGCCTTTCTTGGGTCGTAAGAAAGACCCCAGAAGGGGAGAGTTTTAGTGACTTATATATATGTTTGATACTTACAGGAGTTATGGTATCTGGGTTTGTCACAGATGCAATTGGAACACATTCTGTATTAGGTGCATTTGTGTTTGGTTTGGTGATTCCAAATGGCCCACTTGGGGTTGCATTGATAGAGAAGCTTGAGGATTTTGTTTCTGGCCTTTTGCTGCCTCTTTTCTTCGCTATTAGTGGGCTTAGGACTAATGTGAAAGCCTTAAGTGGATTTTCCACATGGGCTTTTACTATGCTTGTGATTGTACTAGGTTGTGCTGGAAAAGTAGCTGGTACTGTTCTTATCTGTTTCTTTTATCAGATGCCCTTCTATGAAGGAGTTACTCTTGGCTTGTTGTTGAATACTAAAGGCCTTGTTGAAATGATCATTCTTAATGTTGGGAGGGACCAAAAGGTCTTAGACGATGAAGCATTTGCAATGATGGTAATCGTAGCCATAACAATGACTGGAATCATAACCCCACTAGTCACCGCAATCTACAAACCCTCGAGAAGATCGATCGCCTACAAGAAACGAACAATCCAAAGATCCAGGCCCGATTCGGAACTACGAGTCCTCATATGCATTCACAACCCTAGAAATGTCCCGACAATCATCAACCTCATAGAAGCCACTCACCCAACAAAAAAATCCCCCATTTGTATCTACGTGCTCCACTTGGTCGAACTATCGGGCCGGGCCTCCGCCATGCTAATCATCCACAACACCCGAGAATCCGGAAAGCGGGCCCTAAACCGTACCCAAGCCCAATCCGATCACATCATAAACGCTTTTACTAACTACGAATCTCACGCAAATAATTGTGTTTCGGTTCAACCCCTAACCGCCATTTCTCCATACCCCACGATGCACGAAGATATTTGTAATTTGGCCGAGGATAAAAGGGTTGCGTTTATTATCCTTCCGTTTCACAAGCAACAAACAGTTGATGGGTGGATGGAGGCTACAAATCCGGCTTTTAGGACAGTGAATTTGAATGTGTTGGCAAACGCGCCATGTTCAGTAGGGATTTTGATTGATAGAGGGCTCAATGGGGCTACCCGTAATTTGGCTTCTAATAAAATGGCTCACCATGTTGTCTTGTTGTTCTTTGGCGGACCTGATGATAGAGAAGCTTTGTCATATGCATGGAGAATGTCAGAGCATCCAGGTACAAACTTGACCGTAATGAGGTTTGTAGCTGCTGAAGAAGCACGTAGAGAGTCTCATAGTGAACCAGAAGGCCTATTAACAGTAGAAACAGATGTTGAGAAGAACCTCGACGAAAGGTGTTTGAATGAGTTCAAAATGAAGGCAGCTCATCAAGAATCAATAATCTATACAGAGATTGTGTTGAATGATGGAGATCAAACGGTGGCGGCGATAAGGAGTATAGACACTGCACATGATTTGTTTATAGTTGGGAGAGGACAAGGCGTAATCTCACCCCTAACAGCCGGATTGATGGATTGGAGCGAGTGTCCGGAGCTCGGACCGATAGGAGACTTGTTGGCATCTTCGGATTTTGCATCCAATGTTTCAGTTTTGGTGGTGCAACAATATGTTGGAATAGGAATCAATGGAGACATTGTTGGAACTCCGGATAGCCCATTAGGGAAAGTAGACCATCATTTACAGTTTAGTAAATCAAAACCATAA 2466 44.08 MALPASDSSLPNNTEPIVCYAPNMITTNGIWQGDNPLDYSLPLFILQLSMIVILTRILVFILKPLRQPLVISEILGGVILGPSVLGRNAKFADTVFPLRSVMVLETMANIGLLYFLFLIGVEMDITVIKRTGKKALAIAIGGMVLPFTIGASFSLVMHKKDPNMNEATFVLFLGVALSVTAFPVLARILAELKLINTELGRMAMSTALINDITAWVLLALAITLAENHKASAATIWVILSCIGFICVCFFVVRPCLSWVVRKTPEGESFSDLYICLILTGVMVSGFVTDAIGTHSVLGAFVFGLVIPNGPLGVALIEKLEDFVSGLLLPLFFAISGLRTNVKALSGFSTWAFTMLVIVLGCAGKVAGTVLICFFYQMPFYEGVTLGLLLNTKGLVEMIILNVGRDQKVLDDEAFAMMVIVAITMTGIITPLVTAIYKPSRRSIAYKKRTIQRSRPDSELRVLICIHNPRNVPTIINLIEATHPTKKSPICIYVLHLVELSGRASAMLIIHNTRESGKRALNRTQAQSDHIINAFTNYESHANNCVSVQPLTAISPYPTMHEDICNLAEDKRVAFIILPFHKQQTVDGWMEATNPAFRTVNLNVLANAPCSVGILIDRGLNGATRNLASNKMAHHVVLLFFGGPDDREALSYAWRMSEHPGTNLTVMRFVAAEEARRESHSEPEGLLTVETDVEKNLDERCLNEFKMKAAHQESIIYTEIVLNDGDQTVAAIRSIDTAHDLFIVGRGQGVISPLTAGLMDWSECPELGPIGDLLASSDFASNVSVLVVQQYVGIGINGDIVGTPDSPLGKVDHHLQFSKSKP 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10152369 10155279 + Conep06aG0131900.1 Cone6ag1271 440155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1271 821 Gene3D - 43 444 IPR038770 -
Cone6ag1271 821 Gene3D - 479 764 - -
Cone6ag1271 821 FunFam Cation/H(+) antiporter 15 43 443 - -
Cone6ag1271 821 Pfam Sodium/hydrogen exchanger family 53 432 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cone6ag1271 821 PANTHER CATION/H + ANTIPORTER 19 790 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1271 K26731 - - cit:102623470 1218.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0428 Cone-Chr12:2533252 Cone6ag1271 Cone-Chr6:10152369 1.14E-10 dispersed
Cone17ag0294 Cone-Chr17:1409289 Cone6ag1271 Cone-Chr6:10152369 2.33E-226 dispersed
Cone20ag1063 Cone-Chr20:7422683 Cone6ag1271 Cone-Chr6:10152369 1.28E-104 dispersed
Cone20ag1107 Cone-Chr20:7619235 Cone6ag1271 Cone-Chr6:10152369 2.46E-220 dispersed
Cone5ag0163 Cone-Chr5:681794 Cone6ag1271 Cone-Chr6:10152369 1.76E-87 dispersed
Cone5ag0652 Cone-Chr5:2788928 Cone6ag1271 Cone-Chr6:10152369 7.67E-126 dispersed
Cone5ag0653 Cone-Chr5:2792546 Cone6ag1271 Cone-Chr6:10152369 6.34E-129 dispersed
Cone6ag1271 Cone-Chr6:10152369 Cone9ag0825 Cone-Chr9:3996401 6.67E-248 dispersed
Cone11ag0035 Cone-Chr11:194641 Cone6ag1271 Cone-Chr6:10152369 2.16E-38 transposed
Cone12ag0018 Cone-Chr12:165910 Cone6ag1271 Cone-Chr6:10152369 0 wgd
Cone6ag1271 Cone-Chr6:10152369 Cone8ag0012 Cone-Chr8:121980 8.76E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1313 . . . . . . . . . Cmo20g01059 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1271 . . . . . . . . . . . . . . . . . Cma20g01053 . . . Cpe16g00093 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag1271 . 11 821 Antiporter Super Family AT2G13620 68.4 0.0e+00 1120.9
Cone12ag0018 . 6 792 Antiporter Super Family AT2G13620 69.8 0.0e+00 1094.7
Cone8ag0012 . 1 231 Antiporter Super Family AT2G13620 56.9 2.1e-74 278.1
Cone10ag0300 . 76 831 Antiporter Super Family AT3G53720 69.4 4.5e-297 1017.7
Cone10ag0299 . 77 804 Antiporter Super Family AT3G53720 57.3 1.2e-228 790.4
Cone6ag0825 . 83 781 Antiporter Super Family AT3G53720 50.3 7.9e-185 644.8
Cone9ag0826 . 1 803 Antiporter Super Family AT5G41610 65.7 1.3e-299 1026.2
Cone6ag0825 . 1 807 Antiporter Super Family AT5G41610 65.4 1.6e-297 1019.2
Cone9ag0825 . 1 777 Antiporter Super Family AT5G41610 65.3 7.3e-290 993.8
Cone14ag0671 . 1 783 Antiporter Super Family AT5G41610 62.9 9.2e-277 950.3
Cone10ag0300 . 1 806 Antiporter Super Family AT5G41610 51.4 1.3e-209 727.2
Cone15ag0680 . 1 348 Antiporter Super Family AT5G41610 52.2 3.9e-102 370.2
Cone15ag0681 . 1 146 Antiporter Super Family AT5G41610 52.7 2.2e-36 151.8
Cone6ag0825 . 11 808 Antiporter Super Family AT4G23700 65.1 3.9e-283 971.5
Cone9ag0826 . 11 808 Antiporter Super Family AT4G23700 64.8 5.6e-282 967.6
Cone9ag0825 . 13 788 Antiporter Super Family AT4G23700 60.8 2.9e-270 928.7
Cone14ag0671 . 8 804 Antiporter Super Family AT4G23700 58.3 4.5e-263 904.8
Cone15ag0680 . 1 343 Antiporter Super Family AT4G23700 52.2 8.3e-100 362.5
Cone15ag0681 . 9 146 Antiporter Super Family AT4G23700 56.6 3.1e-38 157.9
Cone14ag0671 . 5 801 Antiporter Super Family AT3G17630 71.3 0.0e+00 1092.0
Cone6ag0825 . 4 782 Antiporter Super Family AT3G17630 65.3 1.4e-282 969.5
Cone9ag0825 . 13 771 Antiporter Super Family AT3G17630 66.3 1.8e-280 962.6
Cone9ag0826 . 4 782 Antiporter Super Family AT3G17630 64.1 2.0e-279 959.1
Cone10ag0300 . 8 804 Antiporter Super Family AT3G17630 51.4 8.4e-206 714.5
Cone15ag0680 . 1 354 Antiporter Super Family AT3G17630 62.9 2.0e-127 454.1
Cone6ag0825 . 1 782 Antiporter Super Family AT1G64170 58.6 6.4e-246 847.8
Cone9ag0826 . 11 782 Antiporter Super Family AT1G64170 59.1 4.2e-245 845.1
Cone9ag0825 . 14 784 Antiporter Super Family AT1G64170 55.5 6.1e-228 788.1
Cone14ag0671 . 7 782 Antiporter Super Family AT1G64170 52.9 3.2e-221 765.8
Cone6ag1271 . 11 821 Antiporter Super Family AT2G13620 68.4 0.0e+00 1120.9
Cone12ag0018 . 6 792 Antiporter Super Family AT2G13620 69.8 0.0e+00 1094.7
Cone8ag0012 . 1 231 Antiporter Super Family AT2G13620 56.9 2.1e-74 278.1
Cone6ag0825 . 1 782 Antiporter Super Family AT1G64170 58.6 6.4e-246 847.8
Cone9ag0826 . 11 782 Antiporter Super Family AT1G64170 59.1 4.2e-245 845.1
Cone9ag0825 . 14 784 Antiporter Super Family AT1G64170 55.5 6.1e-228 788.1
Cone14ag0671 . 7 782 Antiporter Super Family AT1G64170 52.9 3.2e-221 765.8
Cone6ag0825 . 11 808 Antiporter Super Family AT4G23700 65.1 3.9e-283 971.5
Cone9ag0826 . 11 808 Antiporter Super Family AT4G23700 64.8 5.6e-282 967.6
Cone9ag0825 . 13 788 Antiporter Super Family AT4G23700 60.8 2.9e-270 928.7
Cone14ag0671 . 8 804 Antiporter Super Family AT4G23700 58.3 4.5e-263 904.8
Cone15ag0680 . 1 343 Antiporter Super Family AT4G23700 52.2 8.3e-100 362.5
Cone15ag0681 . 9 146 Antiporter Super Family AT4G23700 56.6 3.1e-38 157.9
Cone9ag0826 . 1 803 Antiporter Super Family AT5G41610 65.7 1.3e-299 1026.2
Cone6ag0825 . 1 807 Antiporter Super Family AT5G41610 65.4 1.6e-297 1019.2
Cone9ag0825 . 1 777 Antiporter Super Family AT5G41610 65.3 7.3e-290 993.8
Cone14ag0671 . 1 783 Antiporter Super Family AT5G41610 62.9 9.2e-277 950.3
Cone10ag0300 . 1 806 Antiporter Super Family AT5G41610 51.4 1.3e-209 727.2
Cone15ag0680 . 1 348 Antiporter Super Family AT5G41610 52.2 3.9e-102 370.2
Cone15ag0681 . 1 146 Antiporter Super Family AT5G41610 52.7 2.2e-36 151.8
Cone14ag0671 . 5 801 Antiporter Super Family AT3G17630 71.3 0.0e+00 1092.0
Cone6ag0825 . 4 782 Antiporter Super Family AT3G17630 65.3 1.4e-282 969.5
Cone9ag0825 . 13 771 Antiporter Super Family AT3G17630 66.3 1.8e-280 962.6
Cone9ag0826 . 4 782 Antiporter Super Family AT3G17630 64.1 2.0e-279 959.1
Cone10ag0300 . 8 804 Antiporter Super Family AT3G17630 51.4 8.4e-206 714.5
Cone15ag0680 . 1 354 Antiporter Super Family AT3G17630 62.9 2.0e-127 454.1
Cone10ag0300 . 76 831 Antiporter Super Family AT3G53720 69.4 4.5e-297 1017.7
Cone10ag0299 . 77 804 Antiporter Super Family AT3G53720 57.3 1.2e-228 790.4
Cone6ag0825 . 83 781 Antiporter Super Family AT3G53720 50.3 7.9e-185 644.8
Cone20ag1063 . 36 798 Antiporter Super Family AT3G52080 51.2 1.7e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39