Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1272 ATGAAAGAAGCTCTAAAAAGCAGTAATGTCCCTCCCTTATTCACATGTCCTATCAGTCTGGAATTGCTCAAAGATCCAGTTACTCTATCCACAGGCCAAACTTATGAGAGATCAAGCATAGAAAAATGGATATCTCAAGGCAATCTAACATGCCCTGTCACAATGCAAAAGCTCCATAATCCCCCCTCCCTTGTTCCCAACCATACTCTTCACCATTTGATCCATCAATGGATGCAAACCAATCATTACAATTCCGGCCCCAAAAAGAGCATCTTATCAAGCGATTCTTTCTCCGCTTTGAAAAACAACTTGGAATGTCATAGTTTTTCCTTAGACAACAAGCTTCAAACCCTTCGAATAATCGGAACCTTGTTTGAAGAATCTTCATCTATGAACAATCACTCTCGTGATCATGATCAATTCCATTTCGGGTGCTTTCTACCAATAATTTTAGAGCTTGTTTTTGCACCAGATCAATCCCAGGTACTCTCCCATGAGTACTTAAATTTTGTGGAGGAAGCACTTCCTTTTGTTGTAAAAAAATTACTCCCTCTTTGTAAATTAGGGCCTCTAAATGTGCTCAAAGAAGAGTCCCAATTAAATTCATTACTGCTTCTATTGAAAAATGGGAGTGATATGATCAAGATAAGTTTGTGCCATCTTCTAGAAGCAATATCCTCCTCCTCTGAGACTAAAGAGCTTAACGCCGCACTCGAAAACACCCTTGAATTTTCACATGAAATCATACAACTTCTTCACTTGAGATCCGAGGCTTCTAAAGTGGCAATGAAGACTCTATCGACTATATGTAACAACCCGGAATTGAATGTAGGGAATTTCATAAAAGAAGGAGCAATAGATGGGGTCGTCAAATACATTGCAGAAAGCGAAGAAAGCAGCTTGAGATTGGTAGCAATGAGGGTGCTTGAGAGACTTGTAGGAGAGGGAGTTAGTGGGAGAGAAGAGGTGATGAAGAACCGCAACGTGGTATTAATTGGTGCTCTTGTTACAATGGTGTTTAGAGTATGTAATGAAGATCATGAAGGGAGTGAGAGTGCTTTGAGCTTGCTTTTACTGGTGTGTAGTGATTCAATGGAGGCAAGAGAAGAGGCAGTGAAGGTGGGAGTTTTGAGTCAGTTGTTGCTTCTTTTGCAGAGCCAGTGTAGTGATGGGATCAAAATGAAGGCTAGCACATTGCTCAAGTTGCTTAGGGCGAAATGGGATGAGGAGAGGAGTTAG 1239 40.92 MKEALKSSNVPPLFTCPISLELLKDPVTLSTGQTYERSSIEKWISQGNLTCPVTMQKLHNPPSLVPNHTLHHLIHQWMQTNHYNSGPKKSILSSDSFSALKNNLECHSFSLDNKLQTLRIIGTLFEESSSMNNHSRDHDQFHFGCFLPIILELVFAPDQSQVLSHEYLNFVEEALPFVVKKLLPLCKLGPLNVLKEESQLNSLLLLLKNGSDMIKISLCHLLEAISSSSETKELNAALENTLEFSHEIIQLLHLRSEASKVAMKTLSTICNNPELNVGNFIKEGAIDGVVKYIAESEESSLRLVAMRVLERLVGEGVSGREEVMKNRNVVLIGALVTMVFRVCNEDHEGSESALSLLLLVCSDSMEAREEAVKVGVLSQLLLLLQSQCSDGIKMKASTLLKLLRAKWDEERS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10165236 10166474 + Conep06aG0132000.1 Cone6ag1272 440156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1272 412 Pfam U-box domain 10 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1272 412 SUPERFAMILY RING/U-box 8 82 - -
Cone6ag1272 412 Gene3D - 85 412 IPR011989 -
Cone6ag1272 412 SUPERFAMILY ARM repeat 87 402 IPR016024 -
Cone6ag1272 412 CDD RING-Ubox_PUB 11 58 IPR045210 -
Cone6ag1272 412 SMART Ubox_2 13 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1272 412 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1272 412 FunFam RING-type E3 ubiquitin transferase 10 83 - -
Cone6ag1272 412 PANTHER WDSAM1 PROTEIN 9 409 IPR045185 GO:0061630(InterPro)
Cone6ag1272 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1272 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1272 Cone-Chr6:10165236 Cone8ag1127 Cone-Chr8:9943296 2.55E-39 dispersed
Cone12ag0019 Cone-Chr12:170439 Cone6ag1272 Cone-Chr6:10165236 1.71E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g393 . . . . . . . . . . . Cma20g00922 . Car20g00807 . . . . . . . . . . . . . . . . . . . Cone6ag1272 . . . Chy11g00460 . . . . . . . . . . . Cmo20g00929 . . . . . Cpe01g00435 Bhi10g02092 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053968 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1