Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1277 ATGGCAACAATGAACTCTGGTGTTCTAGCTTGTAGCTATGCAATTTCAGGAGCAGCTTCTTCATCTGAGCTTAGTACAAAGCTTATCAACTCATTGCCCTGTGTTGCATCCACACCTGCTAAATTTTGTGCAATTAAAGCCCATCAAGCTAGAGTTAGGGGTGACGATGATAAGGAATCCCAAGGAAGAAGGGCTGCCCTTGTTTGCTTAGCATCTGCCATTTTTGCCTCTGTTTCTGCTGCCTCTAATTCTTCTGCTAGTGCTGGTGTTATAGAAGAATACCTTGAGAAGAGCAAAGCTAATAAGGAATTGAATGACAAAAAGAGATTGGCAACAAGTGGGGCTAACTTTGCAAGGGCTTACACTGTTCAATTTGGGACATGCAAGTTCCCTGAGAACTTTACAGGATGCCAAGATCTTGCCAAACAAAAGAAAGTGCCGTTTATCAGTGATGATCTGCAGTTGGAATGTGAGGGCAAAGACAAGTACAAGTGTGGGTCCAATGTATTCTGGAAATGGTGA 522 42.91 MATMNSGVLACSYAISGAASSSELSTKLINSLPCVASTPAKFCAIKAHQARVRGDDDKESQGRRAALVCLASAIFASVSAASNSSASAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLQLECEGKDKYKCGSNVFWKW 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10198074 10199335 - Conep06aG0132500.1 Cone6ag1277 440161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1277 173 Gene3D - 89 173 IPR044907 -
Cone6ag1277 173 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 173 IPR008796 GO:0009522(InterPro)|GO:0015979(InterPro)|GO:0030093(PANTHER)
Cone6ag1277 173 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 43 173 IPR008796 GO:0009522(InterPro)|GO:0015979(InterPro)
Cone6ag1277 173 FunFam Photosystem I reaction center subunit N 89 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0020 Cone-Chr12:174101 Cone6ag1277 Cone-Chr6:10198074 1.35E-75 wgd
Cone6ag1277 Cone-Chr6:10198074 Cone8ag0016 Cone-Chr8:135147 2.16E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1277 K02701 - mtr:11431141 237.269