Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1279 ATGGAGAACTTACAGAACGCAAACCCTGACCCTAGCTCTATCCGAGATCTGAATCAGAGTCCAGTTACATCGGTTGGTACGAGTATGTGGCCGACGATTGATGGCCCGCTTGGGCTGTCCGAGGAAGATTCAGTCGCCTACGCTCGGCGGTTCTACAAGTTCGGCTTTGCTTTGCTTCCATGGATTTGGGCCGTCAATTGCTTCTACTTTTGGCCTGTCCTCCGCCACTCCCGCTCTTTCCCTCGCATTCGCCCCTATATCGTAGGATCAGCAATTGGCTTTACTGTATTTTCAGCTCTACTCTCTTCATGGGCCTTGACATTTGCCATTGGGGGAGAGGATCTCTTCGGGCCCGTCTGGGATAAGTTGGTAATGTACAATCTGGCTGACAGAATCGGCTTGACTGGCTGGAGCTAG 417 52.04 MENLQNANPDPSSIRDLNQSPVTSVGTSMWPTIDGPLGLSEEDSVAYARRFYKFGFALLPWIWAVNCFYFWPVLRHSRSFPRIRPYIVGSAIGFTVFSALLSSWALTFAIGGEDLFGPVWDKLVMYNLADRIGLTGWS 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10230694 10232816 - Conep06aG0132700.1 Cone6ag1279 440163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1279 138 PANTHER GAMMA-SECRETASE SUBUNIT PEN-2 9 138 IPR019379 GO:0070765(PANTHER)
Cone6ag1279 138 Pfam Presenilin enhancer-2 subunit of gamma secretase 41 128 IPR019379 -
Cone6ag1279 138 MobiDBLite consensus disorder prediction 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1279 K06170 - - gmx:106798930 222.246
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1305 . Blo16g00543 . . . Bpe13g00040 . . . Cmo20g01069 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1279 . . . . . . . Bda11g01385 Bda14g01043 . . . Bma06g00493 . . . . Cma20g01061 . . . . . . . . . . . Cla02g00052 Cam02g0053 Cec02g0054 Cco02g0046 Clacu02g0052 Cmu02g0052 . Lsi10g00731 . . Cme11g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013145 2 1 1 1 1 0 2 0 1 1 0 0 2 1 1 2 0 1 1 0 1 1 1 0 1 0 1 1 1 1 26