Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1281 ATGCCTAGTTGGTGGGGTAAAAAGCCTAGCAAGAAGAAACCTACCGACAACAACAACAAGCCCAAGAGCTTTGACGAGGTCTTCTCTCCCACGACTCCATCTCGCAATTCACCGAGTTCCAGCAACAATCCGTCATCTTCAGGGTCGGTTCCCGGCGGGTTTTCTGGCTTCTCGGGGTTCGATTCTGATAATGGCGAACGGAGAGGGCACCCTCTCCCTCGTCCAGCCCTACCGCAGACCTTTGCGATTGATAATGGGGTTTCTGGGTCGGGCTCGGTTTCAAGTGTTAGCTCTTCCGGGTCGTCGGATGATCATCCAGTTGCCGCTCAGGATCAGGAGTTTGGTAATTTCAGAGGACTTGGTAATGTGAAGATAGATATGAGGTCAAGGAGTCCGGGTCCCAGACCAAGAGGGGGGTCCACAAGCCCGACATTGCCTCTTCATCAACGGTTGTGTGGCTTTAGCTTAGATTCACCAGATGGAAAGAGTCAGTGTCATAAGCTTCCTCTTCCTCCAGGTTCTCCTACTAGCCCTAATTCTTCCTTGATGAATGTAAAGTCGATCCCAGCTGGTGAAAACTTGCATACTCAATCAAAATGGAAGAAAGGAAAGCTTTTAGGAAGGGGCACTTTTGGACATGTTTACCTTGGATTCAATAGTATAAGTGGGCAAATGTGTGCCATAAAAGAAGTACGGGTTGTAAGTGATGATAACTCATCAAAAGAATGTCTTCGGCAACTGAACCAGGAGATAAATTTGCTTAGTCAGCTTTCACATCCAAATATTGTTCAATACTATGGCAGTGAAATGGGTGATGAAGCACTCTCGGTCTATTTAGAATACGTCTCAGGTGGCTCAATCCACAAATTAGTTCAAGAATACGGGCCTCTTAAGGAGCCTGTTATACAAAATTACACCCGAAAGATTGTTTCTGGGCTTGCCTATCTACATGGAAGAAATACAGTGCACAGGGACATCAAGGGGGCAAACATATTAGTAGATCCGAATGGGGAGATCAAGTTGGCGGATTTTGGCATGGCTAAACATATAACTAATTGTACATCAATGCTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCCGAGCTTGTTATGAATGCAAATGGATACAGTCTTGCAGTAGATATATGGAGCTTGGGTTGCACAGTTATCGAAATGGCAACTTCTAAACCCCCTTGGTACAAGTATGAAGGGGTAGCTGCTATATTCAAGATTGGAAACAGCAAAGAGCTTCCCGAAATTCCGGATCATCTATCTAATGATGCAAAACATTTTGTGAAATTCTGCTTGCAGCGGTGCCCGGAAGCCCGACCCACTGCCTCACAACTGTTAGACCACCCTTTTCTACGAGATCAATCGACAAATAGAGTTGCTCATCTAAGTCATCTTAATTTCTCCATGGATGCCTTTTCCCACTCACTTGATGGAAGCCAAACTCCACTAACCTTAGATCATTGCCCCAGAAGAAAAAGTACAAGTACATGTGATAGAGAATACCCGACAAGTCCGCTAAGCATGACTTCCCAGGCACTCATAAGCCCAAGGAATTCGAAGATGCCGATAGAAATGCCGAAAGGCCTTCCGTTTGTAGTGGATACATGGTCGCCGTCATCGAGGAAGAAAAGGTATCAATTCCTGACTCATGCTCACAAGGATCACACGTCTGGGATCTCTGCTCATGCTTCCTATCCGATTTATTGTGCGAATTTCACTAAAACCCTAGTTCTTCAGCAATATCCTCAGCTTAGTGAATCGTTGTTTGTTGGTATCGAAGTAGCGCAATCTGTGGTGATCGATGATGTTGATGGAGCTTTCACTGTGACGGCTTTTGATGCGAATCATTGCCCTGGAGCCTTAATGTTCTTGTTTGAAGGCAATTTTGGCAATATCCTACACACTGGAGATTGCAGACTTACTCCAGAGTGCCTACAAAATTTACCCGAGAAGTATCTCAGCAGAAAAGGAAAAGAGCCAAAGTGTCCACTAGATTTTGTATTCCTAGATTGTACATTTGGCAGATCCTCTCAAAAGTTTCCAAGCAAGCATTTAGCTATTCATCAGGTTATCAATTGCATATGGAAGCATCCTGATGCTCCTGTGATTTACCTTAGCTGTGATCTTCTTGGTCAGGAAGACATACTGAGACAGGTTTCCCAAACATTTGGAACAAAGATATATGTTGATCGATCCAAAAGTCCAGATTGTTACCAAGCTCTTGCCCTTACATCTCCCGAAATCATCTCACAAGATTCATCTTCCCGCTTCCAGATATTTGATGGGTTTCCTAGATTATATGAAAGAGCCAAACTGAAACTTGATGAGGCACGGAAGAAATTCCAGGATGAGCCTCTTATTATACGCCCATCTGCTCAGTGGTATGTTTGTGATGAAGAGTTTTCAGAGGGCGTAAGTACAAGGAATCAGAGAATTAATGAAGCTGTGAAGGATCAGTCTGGTGTTTGGCATGTATGTTACTCAATTCACTCATCCAAGGAAGAATTAGAATGGGCTCTACACAGTTTAGCACCTCAGTGGGTCGTTTCAACGTCTCCCAGTTGTCGGGCCATGGAGTTGAATTATATTAAGAAACACTGTGCTCTCACTAAAATAACATCAAATCATCCAATTTGGAAGCTTCTGGATTTTTCCATTGAATCTTCTTTGAATGAAGATGCATCAGTAGAAGTACAATGTTCATTGGTTGAAGGACCCTCTGAAACTTATTTAGAAACTCAATTATTACAAATAGAAGAAAAGATATCTGCTAAGCCAAAATTATGTTTATCACCTCTGAGCAAAAAGTTGCCTGTAACATTATTTGGAAAAGCCAGACTTGGTCTCCGTGATCTAAATTTCTATGAGGAACCAAAAATGGTGTCTAAAAACACTGACCCTCCACAAGCTGTTGATGAAAACAAAGTGGAACAACTCTGCCAAGAGGAAAAGCGGGAATCAATAGAGGAAAATTCTTTAGAGAGTCGGATAGAGGGTGGTGTTTTTCAAGTAGTACAAAGTGAAAAATTAGCTGAAGGAGCCAAAGAGGTTCATAGAAATGCTTCTTGTTTAACAGTTGGATCTTCAAATGCTGGATTTAGTGAGAAGTTTAGAAAGCTATACCGGGTGATGAATGTTCCTGTGCCCGAGCCTCTTCCTTCCTTGGTGGAACTTCTGAAGTCTGGAAAAAGTGTGAAAAGGAGGTTCGAGTTTTAG 3231 43.05 MPSWWGKKPSKKKPTDNNNKPKSFDEVFSPTTPSRNSPSSSNNPSSSGSVPGGFSGFSGFDSDNGERRGHPLPRPALPQTFAIDNGVSGSGSVSSVSSSGSSDDHPVAAQDQEFGNFRGLGNVKIDMRSRSPGPRPRGGSTSPTLPLHQRLCGFSLDSPDGKSQCHKLPLPPGSPTSPNSSLMNVKSIPAGENLHTQSKWKKGKLLGRGTFGHVYLGFNSISGQMCAIKEVRVVSDDNSSKECLRQLNQEINLLSQLSHPNIVQYYGSEMGDEALSVYLEYVSGGSIHKLVQEYGPLKEPVIQNYTRKIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHITNCTSMLSFKGSPYWMAPELVMNANGYSLAVDIWSLGCTVIEMATSKPPWYKYEGVAAIFKIGNSKELPEIPDHLSNDAKHFVKFCLQRCPEARPTASQLLDHPFLRDQSTNRVAHLSHLNFSMDAFSHSLDGSQTPLTLDHCPRRKSTSTCDREYPTSPLSMTSQALISPRNSKMPIEMPKGLPFVVDTWSPSSRKKRYQFLTHAHKDHTSGISAHASYPIYCANFTKTLVLQQYPQLSESLFVGIEVAQSVVIDDVDGAFTVTAFDANHCPGALMFLFEGNFGNILHTGDCRLTPECLQNLPEKYLSRKGKEPKCPLDFVFLDCTFGRSSQKFPSKHLAIHQVINCIWKHPDAPVIYLSCDLLGQEDILRQVSQTFGTKIYVDRSKSPDCYQALALTSPEIISQDSSSRFQIFDGFPRLYERAKLKLDEARKKFQDEPLIIRPSAQWYVCDEEFSEGVSTRNQRINEAVKDQSGVWHVCYSIHSSKEELEWALHSLAPQWVVSTSPSCRAMELNYIKKHCALTKITSNHPIWKLLDFSIESSLNEDASVEVQCSLVEGPSETYLETQLLQIEEKISAKPKLCLSPLSKKLPVTLFGKARLGLRDLNFYEEPKMVSKNTDPPQAVDENKVEQLCQEEKRESIEENSLESRIEGGVFQVVQSEKLAEGAKEVHRNASCLTVGSSNAGFSEKFRKLYRVMNVPVPEPLPSLVELLKSGKSVKRRFEF 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10240385 10252386 - Conep06aG0132900.1 Cone6ag1281 440165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1281 1076 Gene3D Transferase(Phosphotransferase) domain 1 196 485 - -
Cone6ag1281 1076 SUPERFAMILY Metallo-hydrolase/oxidoreductase 537 863 IPR036866 -
Cone6ag1281 1076 MobiDBLite consensus disorder prediction 1 182 - -
Cone6ag1281 1076 FunFam Mitogen-activated protein kinase kinase kinase 198 480 - -
Cone6ag1281 1076 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 64 461 IPR050538 -
Cone6ag1281 1076 MobiDBLite consensus disorder prediction 21 53 - -
Cone6ag1281 1076 FunFam DNA repair metallo-beta-lactamase family protein 534 701 - -
Cone6ag1281 1076 SMART serkin_6 200 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1281 1076 ProSiteProfiles Protein kinase domain profile. 200 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1281 1076 MobiDBLite consensus disorder prediction 83 106 - -
Cone6ag1281 1076 Pfam DNA repair metallo-beta-lactamase 750 860 IPR011084 -
Cone6ag1281 1076 CDD STKc_MEKK1_plant 199 456 - -
Cone6ag1281 1076 Gene3D - 534 856 IPR036866 -
Cone6ag1281 1076 FunFam DNA repair metallo-beta-lactamase family protein 684 835 - -
Cone6ag1281 1076 MobiDBLite consensus disorder prediction 488 508 - -
Cone6ag1281 1076 SUPERFAMILY Protein kinase-like (PK-like) 198 525 IPR011009 -
Cone6ag1281 1076 Gene3D - 684 835 - -
Cone6ag1281 1076 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524(InterPro)
Cone6ag1281 1076 Pfam Protein kinase domain 201 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1709 Cone-Chr4:12683020 Cone6ag1281 Cone-Chr6:10240385 8.57E-17 dispersed
Cone6ag1281 Cone-Chr6:10240385 Cone8ag0112 Cone-Chr8:570627 7.36E-101 dispersed
Cone12ag0023 Cone-Chr12:182913 Cone6ag1281 Cone-Chr6:10240385 2.96E-239 wgd
Cone6ag1281 Cone-Chr6:10240385 Cone7ag1466 Cone-Chr7:10327736 6.30E-29 wgd
Cone6ag1281 Cone-Chr6:10240385 Cone8ag0019 Cone-Chr8:140232 1.00E-236 wgd
Cone6ag1281 Cone-Chr6:10240385 Cone9ag1239 Cone-Chr9:9076150 1.24E-254 wgd
Cone6ag1281 Cone-Chr6:10240385 Cone9ag1329 Cone-Chr9:9976718 2.88E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82958 PF13812 PPR_3 2.90E-06 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1281 - - - 0.0