Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1286 ATGACGCTACAAGCTTCGAATCCAGTACATTTCATTCAATTCCCAAATCCTTTGTGCTCAGCTAAACCCCTTCCTTACCAATTCTTTCGTTCTTCACTGAGTAACACGCTTGGCTTCAGAACCAAATTCAGGTCCAAAAATGGCGCCCTTGCTTCTTCCTTTACGCTAGGGAGGCTTAAAATTAGTGCTTTCAAAGCTTCTAGTTCGGAGTCAAACTTAGTTTTGACCACAGCTGGTGAAGAGGAAGATGCCGATTCAATTAAGCTCTTTGAGAAATTGAAGGATGCGGAGCGACAGCGGATGAGTAAATTGGAGGAATTTAAGAACAAAGCGAATTTGCAGCTGGAGAGACAGCTTGTTATGGCTTCAGATTGGAGTAGGGCCTTGTTGACTATCCGTGGGAAGTTAAAGGGAACAGAGTGGGATCCTGAGAACTCACACAAGATTGACTATAGTGATTTTTTGAGACTACTTAACTCGAATAATGTCCAGTTTATGGAGTACTCAAATTATGGTCAAACAATATCAGTGATTCTACCTTACTACAAAGATGAGGAAATGGACAAAGAGAAAGGGAATACAAAGAATGAAATTATTTTCCGGCGACATGTAATTGACCATATGCCAATTGATTGTTGGAATGGTGTTTGGAAAAAGTTGCATCAGCAAATAGTTAATGTTGATGTGATTAATGTGGATACAGTTCCTGCAGAAGTTTACTCAACTGTTGCAACAGCAGTCATATGGTCTATGAGGCTAGCCCTTTCTGTTGCATTGTATGTATGGATTGACAACTTGACAAGACCAATTTATGCAAAGTTGATACCTTGTGATTTGGGAACTCCTAGAAAAATAACTAGCATGCCCCTCAGGCGGCGTAGCCTTGGATCATTAGGAAAAAGTCGGGCAAAATTTATATCAGCAGAAGAAACTACCGGTGTTACATTTGACGATTTTGCTGGCCAGGAATATATAAAAAGGGAACTGCAAGAGATTGTTCGTATCTTAAAGAACGAAGAAGAGTTCCAAGACAAAGGCATTTATTGCCCAAAAGGAGTGCTTTTGCATGGGCCTCCTGGAACTGGTAAAACACTCTTGGCCAAAGCTATTGCTGGTGAAGCGGGACTTCCTTTTTTTGCAGCAAATGGAACCGACTTTGTAGAGATGTTTGTTGGTGTAGCAGCATCTCGTGTCAAGGATCTTTTTGGTAGCGCCAGATCATTTTCACCCTCTATTATATTTATTGATGAGATAGACGCCATCGGTAGCAAACGTGGTGGACCTGATATTGGAGGGGGTGGAGCAGAGAGAGAACAAGGTCTACTTCAGATACTGACTGAGATGGATGGATTTAAGGTTTCTACGTCTCAGGTGCTAGTTATTGGTGCAACCAATAGACTGGATATTCTTGATCCTGCTCTCTTGAGAAAGGGACGTTTTGACAAGATCATTAGAGTTGGTTTGCCATCAAAAGATGGTAGATTGGCCATATTGAAGGTGCATGCTAGAAATAAATTTTTTCGTTCCGAAGAGGAGAAAGAAGCACTACTCCAGGAAATTGCAGAGCTGACCGAAGATTTTACTGGGGCAGAGTTGCAGAATATATTGAATGAAGCTGGAATATTGACGGCTAGAAAAGATCTAGACTATATTGGACGAGAAGAGATGCTAGAAGCTTTGAAGAGGCAACAAGGCACATTTGAAACGGGCCAGGAAGATAGTACTGAAATTCCTGAAGAGTTAAAACTGAGATTGGCATATAGAGAAGCAGCTGTTGCTATTCTTGCATGCTACCTTCCAGATACCCATCGCTACTTCACTGAGACAGATATAAAGTCAATTCGTAGTCAGCCAAATATTCGTTATGCTGAAGCTTCAGGGAAGTTCTTCTCAAGAAAATCCGATTATGTAAACAATATAGTGCGTGCATGTGCGCCAAGAGTTATTGAGGAGGAGATGTTTGGTGTGGACAACTTATGTTGGATCTCCGCAAAGGCTACTCTAGAAGCTTCAAGGCTTGCAGAATTTTTGATTCTACAGACAGGGATGACAGCTTTTGGAAAAGCTTATTACAGGAGTCAAAATGATCTTGTTCCAAATCTTGCAGCAAAGCTAGAAGCACTTAGAGATGAATACATGCGATATGCTGTGGAAAAATGCAGTTCTGTTCTGAAAGAATACCATTCAGCTGTAGAGACAATCACAGATGTTTTACTTGAGAAGGGAGACATTCAAGCAGAGGAAATTTGGCACATCTATAAAAAGGCTCCTAGAGTTCCACAGCCTTCTGTGAATCCGGTTGATGAATATGGAGCCCTTATATATGCTGGGCGATGGGGCATTCACGGTATTTCGCTACCCGGAAGAGTCACATTTGCACCTGGAAATGTCGGATTCTCTACCTTTGGTGCACCTCGCCCAATGGAGACTCAAGTTATTAACGATGAAACATGGAAGCTGATAGATGATATATGGGATAAAAGGGTCGAGGAAATTAGAGCTGAAGCTTCAGCAGAAGTCGAAAAAGACAAAGAGATTCCCCAACTTCTGATGGCCAGCCATTTCCTTTAA 2571 41.62 MTLQASNPVHFIQFPNPLCSAKPLPYQFFRSSLSNTLGFRTKFRSKNGALASSFTLGRLKISAFKASSSESNLVLTTAGEEEDADSIKLFEKLKDAERQRMSKLEEFKNKANLQLERQLVMASDWSRALLTIRGKLKGTEWDPENSHKIDYSDFLRLLNSNNVQFMEYSNYGQTISVILPYYKDEEMDKEKGNTKNEIIFRRHVIDHMPIDCWNGVWKKLHQQIVNVDVINVDTVPAEVYSTVATAVIWSMRLALSVALYVWIDNLTRPIYAKLIPCDLGTPRKITSMPLRRRSLGSLGKSRAKFISAEETTGVTFDDFAGQEYIKRELQEIVRILKNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFGSARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEEEKEALLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGREEMLEALKRQQGTFETGQEDSTEIPEELKLRLAYREAAVAILACYLPDTHRYFTETDIKSIRSQPNIRYAEASGKFFSRKSDYVNNIVRACAPRVIEEEMFGVDNLCWISAKATLEASRLAEFLILQTGMTAFGKAYYRSQNDLVPNLAAKLEALRDEYMRYAVEKCSSVLKEYHSAVETITDVLLEKGDIQAEEIWHIYKKAPRVPQPSVNPVDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPMETQVINDETWKLIDDIWDKRVEEIRAEASAEVEKDKEIPQLLMASHFL 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10288106 10301364 + Conep06aG0133400.1 Cone6ag1286 440170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1286 856 PANTHER METALLOPROTEASE M41 FTSH 83 758 - GO:0004176(PANTHER)|GO:0006508(PANTHER)
Cone6ag1286 856 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 489 572 - -
Cone6ag1286 856 Gene3D - 297 487 IPR027417 -
Cone6ag1286 856 Pfam AAA+ lid domain 517 555 IPR041569 -
Cone6ag1286 856 SUPERFAMILY FtsH protease domain-like 578 761 IPR037219 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Cone6ag1286 856 Gene3D Peptidase M41 571 758 IPR037219 GO:0004176(InterPro)|GO:0004222(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Cone6ag1286 856 Coils Coil 506 533 - -
Cone6ag1286 856 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic 571 757 - -
Cone6ag1286 856 Gene3D - 489 568 - -
Cone6ag1286 856 SMART AAA_5 349 490 IPR003593 GO:0016887(InterPro)
Cone6ag1286 856 FunFam ATP-dependent zinc metalloprotease FTSH 7, chloroplastic 298 487 - -
Cone6ag1286 856 Pfam ATPase family associated with various cellular activities (AAA) 353 487 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag1286 856 ProSitePatterns AAA-protein family signature. 458 476 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag1286 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 562 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1286 Cone-Chr6:10288106 Cone8ag1522 Cone-Chr8:11480209 7.95E-82 dispersed
Cone6ag1286 Cone-Chr6:10288106 Cone17ag1440 Cone-Chr17:9816321 1.13E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1292 . . . . . . . Bma15g00790 . . Cma03g01092 . Car03g00985 . . . Cpe10g00338 Bhi03g01352 . . . . . . Cla01g01517 Cam01g1587 . Cco04g1301 Clacu01g1612 Cmu01g1498 Cre04g1176 . . Cone6ag1286 . Lsi01g01148 . . Cme08g01082 . Blo06g00196 . . Bpe10g00259 . . . . Cmo03g01078 . . . . . . . . . . . . . . . . . . . . . . Csa06g02783 Chy02g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009022 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33