Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1293 ATGCCTAGCTCTAAAGAGGTGGAGATAGATTTGTTCTTCGATGCACTGGATTACGTATCTTCGTCAGAGGGGTACGGAATTTGGATGAGGGAGCTAGAGAGTGTTAATAATGAAATGGATGTGGAGGTTGAATTTGATGACCCATTAAAGAAAATGGAGTTAGAAAGGGTTTTAGAGAGTAGTGGAGCGGTTTCTAGCTCGGGATATTCTCCTTCTATCTATGAATCCAAGAAAGAAGAAGATGAAGAAGCAAATGGGTTTTCGTATTCCTCTCAAGAATGTAAGAATTTAGATATGGGTAAGAGGAAACTGAAGAGTTTATGGAAATTCCTTTTAAGCAAGAGGAAGGGGATGTTAAAAGGTAAAGTTATTCTGAATGAATCGAAACCAAACCTGAAAAAAACACCAAAGGGGGGTAGTAGAGTGGAGGTAAAACAGAGTAGGAAGAAGTTTATGGAATTATCAGCATTGTATTATAAACAAGAGATTCGAGCTCATAAAGGGTTCATTAGGACAATGAAGTTTAGTCCGGATGGGAAATATCTAGCTAGTGGAGGTGAAGATGGAGTCGTTCGGGTTTGGACTGTTTTGTCAATAGAAGGTTCTATTCAATGTTTGAGTTTTGCTCAAGACGATTCTGATGGAAAATTCAGACAAGGGAAGCCTAGTTTTTTCAAGAAAGAGTCCAACTATTCTGCTTCTGTTGTTGTTCCGAAAAAAGAGTTTCGGATCGAAGAATCGCCTTTGCAGGAGTTCCATGGCCATTTGGGTGATATCTTAGACGTGGCTTGGTCAAATTCAAATTGTCTTCTTTCGGCTTCTATTGATGGAACGGTCCGACTCTGGGAAGTTGGTTCAGAGCAATGTCTAAACATTTTCCATCACAAGAACTATGTAACATGTGTTGAGTTCAATCCATTGGACGAGGATTATTTCATAAGTGGATCTATAGATGGAAAAGCTCGGATTTGGGGGGTTTCGGAAAAGAGAGTTGTGGATTGGACTGATTTTCGAGACATAATTACTGCTATAAGTTACCAACCAGATGGGAAGGGTTTTGCAGTTGGTTCCATTACAGGTACTTGCCGTGTCTACGAAACCTCAGGTGAATATCTGCAGGTGGCATCAGAGATAAATATTAACGGTCGAAAGAAAGGATCTTCAGGCAAAAGTATCACTGGAATTCAGTTTTCCCGGGAAAAACCTCAGAGATTGATGATAACATCCGAAGACTCAAAACTGCGGATATTCGACGGGATTGACATCATCCACAAGTATAAAGGTCTTCCAAAGTCAGGAAGTCAAATGTCGGCTTCTTTCACTCCAAGTAAGAAACACATAGTCTCAGTAGGAGAGGACTCTCACGTATATATATGGAACCACGATGGGCTTTCTTCCATTTCTTCTTCAACTAAAGAAACAAAAAAGTCTGTTAGATGTTGTGAACGTTTCTTTTCGGAAGGTGTATCGGTTGCTATACCATGGCAAGGCATGGGAATGGAAGAAGAAGAAGAAGAAGAGAAGCGATTAAAAATTAGTTATAACGGCAGTTATTTGTCACGAATGTGTGACCGATCGGAACGGCTTTCTTTTGGGAGTTGGATCTCTATGGAAGGTCAATGCAGGGGTTCTGTGACTTGGCCCGAAGAGAAACTTCCCTATTGTCATCTGAGGAAGGAAAATGAAGATCCATGTCAAGTGATTGAAGGGGAACATGAAGAAGCAGAAGATGGTGATGATTGGAATCAGAAGGATCAGGGTTTTCCATTAGAAACATGGGGGCTTGTGATCGTGACAGCAGGATGTGATGGAGTTATTAGGACATTTCAGAATTATGGATTGCCTTGTAGGATCTAG 1857 40.71 MPSSKEVEIDLFFDALDYVSSSEGYGIWMRELESVNNEMDVEVEFDDPLKKMELERVLESSGAVSSSGYSPSIYESKKEEDEEANGFSYSSQECKNLDMGKRKLKSLWKFLLSKRKGMLKGKVILNESKPNLKKTPKGGSRVEVKQSRKKFMELSALYYKQEIRAHKGFIRTMKFSPDGKYLASGGEDGVVRVWTVLSIEGSIQCLSFAQDDSDGKFRQGKPSFFKKESNYSASVVVPKKEFRIEESPLQEFHGHLGDILDVAWSNSNCLLSASIDGTVRLWEVGSEQCLNIFHHKNYVTCVEFNPLDEDYFISGSIDGKARIWGVSEKRVVDWTDFRDIITAISYQPDGKGFAVGSITGTCRVYETSGEYLQVASEININGRKKGSSGKSITGIQFSREKPQRLMITSEDSKLRIFDGIDIIHKYKGLPKSGSQMSASFTPSKKHIVSVGEDSHVYIWNHDGLSSISSSTKETKKSVRCCERFFSEGVSVAIPWQGMGMEEEEEEEKRLKISYNGSYLSRMCDRSERLSFGSWISMEGQCRGSVTWPEEKLPYCHLRKENEDPCQVIEGEHEEAEDGDDWNQKDQGFPLETWGLVIVTAGCDGVIRTFQNYGLPCRI 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10360292 10364641 - Conep06aG0134100.1 Cone6ag1293 440177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1293 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 292 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 SMART WD40_4 156 195 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 SMART WD40_4 245 283 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 SMART WD40_4 286 325 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 SMART WD40_4 419 460 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 SMART WD40_4 327 366 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 SMART WD40_4 377 418 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 334 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 163 196 - -
Cone6ag1293 618 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Cone6ag1293 618 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Cone6ag1293 618 PRINTS G protein beta WD-40 repeat signature 182 196 IPR020472 -
Cone6ag1293 618 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Cone6ag1293 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 163 196 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 Pfam WD domain, G-beta repeat 436 460 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 Pfam WD domain, G-beta repeat 288 324 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 Pfam WD domain, G-beta repeat 340 365 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 Pfam WD domain, G-beta repeat 161 194 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 Pfam WD domain, G-beta repeat 247 282 IPR001680 GO:0005515(InterPro)
Cone6ag1293 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 284 - -
Cone6ag1293 618 SUPERFAMILY WD40 repeat-like 157 607 IPR036322 GO:0005515(InterPro)
Cone6ag1293 618 Gene3D - 149 493 IPR015943 GO:0005515(InterPro)
Cone6ag1293 618 PANTHER WD REPEAT DOMAIN 44 47 618 IPR040324 -
Cone6ag1293 618 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1293 K20241 - - csv:101207772 569.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0130 Cone-Chr6:637844 Cone6ag1293 Cone-Chr6:10360292 8.99E-86 dispersed
Cone6ag1293 Cone-Chr6:10360292 Cone9ag0154 Cone-Chr9:685015 8.32E-85 dispersed
Cone6ag1293 Cone-Chr6:10360292 Cone9ag1247 Cone-Chr9:9140304 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49