Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1295 ATGGTGAGGGACGACTTGTATATTACTGTTCCGAGCTTTTTCAAGTGTCCGATCTCGCTGGACGTGATGAAATCACCTGTAAGCCTATGCACGGGAGTGACCTACGATCGTTCCAGCATCCAGCGGTGGCTAGACAACGGCAACAACACGTGCCCCGCGACGATGCAGGTGCTTCAGAGCAAGGATATTGTTCCTAACCGCAATCTGCAGCGGCTCATCCAGATCTGGTTGGAATCAGTCCGCCACCGTCTCGAGTCGGATGAATCGCTAGACTCACATTCCGTCCCCTCCGAGGACCAGGTATCGGATTTCATCAAGAAAATGGGGAGTAATAAGAGCCGGAGTAACTGCTTCGATTGCCTAATGAAGCTCGTCTGCTTCGCCGGAGAATCAGAGGAGAACCGGAAGTTTCTGTCTAAGTTCGACGGATTCTTGCAAATCCTCGTCGATCTTCTCTGCAATGTAGATGACGAAGACTCCGGAAACCTCGATTTGATTGAACTAACCGTCCGTCTTCTAGATTTTATCCGCGGCGAAATTGAAGATAAAGAACAATTGACGAACTCGATGTTGAAGAGGGATCGGAATTGCTTGAACTCACTTCTTCTCGTGCTTCGACAAGGTAAACTAGAATCTCAAATCGGATCGGCTCGGATTTTGGAATCCATCGCTATAGACGCAGAATCAAAGCTAGCAATTGCTGAAAAAGACGGACTCCTAACCGAATTGATAAAAACAATTACTCCAGACAAGGATCCAAGCCTAATCGAATCGGTATTATCATGCCTAATTTCGGTTTCCATGACGAAACGCATAAAAGGCAAACTAATCAAACTTGGAGCGATCAAATCGTTGACGAAGCTCCTCTCAGAGCCGAATTGGAACGCAAGCGTTACGTTGACCGAGAAGATTCTGAAACTTCTTGAAACGACGTCGTCAGTTAAGGAAGGGCGTTTGGAGATATGCCAAGACTCGACGTGTTTAGCGGCGATTGTACAGAAGGTGTTGAAAGTGTCGAATTCTGCGACGGAACATGCAGTGACGATCTTGTGGAGCGTTTGCTATCTGTTTAGGGATGAGAGGGCTCAAGAGATCGTGACTACGGCCAATGGATTGACCAAGATTTTGCTGTTGATGCAGAGTAATTGCTCGCCTTCGATTAGACATATGGCGACGGATTTGCTCAAGATTTTTCGGGTTCATTCCAAATCTTGTCTATCTAGTTATGATACCAAGACTACACACATAATGCCTTGGTAG 1260 46.67 MVRDDLYITVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQSKDIVPNRNLQRLIQIWLESVRHRLESDESLDSHSVPSEDQVSDFIKKMGSNKSRSNCFDCLMKLVCFAGESEENRKFLSKFDGFLQILVDLLCNVDDEDSGNLDLIELTVRLLDFIRGEIEDKEQLTNSMLKRDRNCLNSLLLVLRQGKLESQIGSARILESIAIDAESKLAIAEKDGLLTELIKTITPDKDPSLIESVLSCLISVSMTKRIKGKLIKLGAIKSLTKLLSEPNWNASVTLTEKILKLLETTSSVKEGRLEICQDSTCLAAIVQKVLKVSNSATEHAVTILWSVCYLFRDERAQEIVTTANGLTKILLLMQSNCSPSIRHMATDLLKIFRVHSKSCLSSYDTKTTHIMPW 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10383394 10384953 - Conep06aG0134300.1 Cone6ag1295 440179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1295 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Cone6ag1295 419 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1295 419 SUPERFAMILY ARM repeat 184 403 IPR016024 -
Cone6ag1295 419 CDD RING-Ubox_PUB 11 62 IPR045210 -
Cone6ag1295 419 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630(InterPro)
Cone6ag1295 419 Gene3D - 188 297 IPR011989 -
Cone6ag1295 419 Gene3D - 298 398 IPR011989 -
Cone6ag1295 419 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1295 419 Pfam U-box domain 10 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone6ag1295 419 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cone6ag1295 419 SUPERFAMILY RING/U-box 5 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1295 Cone-Chr6:10383394 Cone7ag1324 Cone-Chr7:9687474 2.65E-33 dispersed
Cone12ag0032 Cone-Chr12:228996 Cone6ag1295 Cone-Chr6:10383394 1.58E-178 wgd
Cone6ag1295 Cone-Chr6:10383394 Cone8ag0034 Cone-Chr8:211847 4.09E-184 wgd
Cone6ag1295 Cone-Chr6:10383394 Cone9ag1248 Cone-Chr9:9156608 1.24E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1295 - - - 0.0