Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1296 ATGTCTTTGGCTGAATCGGAAGAAGATGGTGGTAGTCATGCAGAGCCTCCCGATCCAGATATTCTTGACATTGATCCGACTTGCCGCTACATTCAGTACAAGGATGTGCTTGGGAAAGGTGCTTTCAAGACAGTTTACAAGGCATTTGATGAAGTTAATGGACTTGAAGTTGCATGGAATCAAGTTCGAATTGATGAGGTGCTGCAGTCTCCTGACGACTTGGAAAGGTTGCACTCAGAAGTGCACCTTTTGAAATCATTGAAGCATAATAACATTGTGCAATTCTACAATTCATGGATAGATGATAAAAACAAGACTGTCAACATTATTACCGAGTTGTTTACCTCGGGCAGCCTCAGACAGTATCGTAAGAAACACAAGAATGTCGAATTGAAAGCTGTTAAGGGATGGGCAAGGCAGATTTTGATGGGTTTGAACTATCTCCATAGTCACCATCCACCAATTATACATAGGGATTTGAAGTGTGATAACATATTTATCAATGGTAATCAGGGAGAGGTTAAAATTGGAGACCTTGGGTTGGCAATTGTTATGCAACAGGCCACTGCCACAAGTGTGATCGGTACGCCTGAGTTTATGGCACCTGAGCTATATGATGAGAATTACAATGAGTTGGCTGACATATATTCATTTGGAATGTGCATGCTCGAGATGGTGACTTTTGAATATCCGTATAGTGAGTGTAGAAACTCTGCCCAGATATACAAGAAAGTCATATCTGGAATAAAGCCTGCTGCTCTATCTAAAGTGAAGGATCCAGATACAAAACAATTTATTGAGAAGTGTCTAGTACCTGCATCTCAGAGATTATCAGCTAAGGAGCTTCTAATGGATCCTTTTCTTCAAGCAAATGGAGCAATAAGAAACCACCCTCTTCCACTTCCTGATATTGTTCTTCCCAAAACAGGAGCCTTTGGAGATCGTTGTTTGATGTCAGAAGGACCTGCTAGTGCACGAAATAGACTTATGGATGCAGATAGTGATGATGAACCCCATACTATCACTACTTTCGATGCTTCTGTTGAGGGTGGCCCCCAGTCTGTGGGCGTAGAGGTTCAAAGGTCCAAGAGAGGGATTTTATTCATCTTAAAAGGCGAACAACATGATGACAACTCAGTATCAGTAATTCTCCGAATAACAGATATCACTGGTCAGCTATTTCCAGGTTTGGTTTATAATCTAGGTTTAAATTGTAATTTGAATCTGAGGGTGGGTTGA 1239 41.16 MSLAESEEDGGSHAEPPDPDILDIDPTCRYIQYKDVLGKGAFKTVYKAFDEVNGLEVAWNQVRIDEVLQSPDDLERLHSEVHLLKSLKHNNIVQFYNSWIDDKNKTVNIITELFTSGSLRQYRKKHKNVELKAVKGWARQILMGLNYLHSHHPPIIHRDLKCDNIFINGNQGEVKIGDLGLAIVMQQATATSVIGTPEFMAPELYDENYNELADIYSFGMCMLEMVTFEYPYSECRNSAQIYKKVISGIKPAALSKVKDPDTKQFIEKCLVPASQRLSAKELLMDPFLQANGAIRNHPLPLPDIVLPKTGAFGDRCLMSEGPASARNRLMDADSDDEPHTITTFDASVEGGPQSVGVEVQRSKRGILFILKGEQHDDNSVSVILRITDITGQLFPGLVYNLGLNCNLNLRVG 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10408117 10412073 - Conep06aG0134400.1 Cone6ag1296 440180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1296 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1296 412 SMART serkin_6 31 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1296 412 Pfam Protein kinase domain 33 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1296 412 MobiDBLite consensus disorder prediction 1 23 - -
Cone6ag1296 412 MobiDBLite consensus disorder prediction 8 22 - -
Cone6ag1296 412 CDD STKc_WNK 29 288 - -
Cone6ag1296 412 SUPERFAMILY Protein kinase-like (PK-like) 33 328 IPR011009 -
Cone6ag1296 412 Gene3D Transferase(Phosphotransferase) domain 1 114 296 - -
Cone6ag1296 412 FunFam probable serine/threonine-protein kinase WNK9 114 293 - -
Cone6ag1296 412 FunFam Probable serine/threonine-protein kinase WNK1 16 112 - -
Cone6ag1296 412 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 17 389 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone6ag1296 412 Gene3D Phosphorylase Kinase; domain 1 17 112 - -
Cone6ag1296 412 ProSiteProfiles Protein kinase domain profile. 31 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1296 Cone-Chr6:10408117 Cone8ag0540 Cone-Chr8:3975950 1.74E-148 dispersed
Cone4ag1513 Cone-Chr4:11756834 Cone6ag1296 Cone-Chr6:10408117 2.32E-13 wgd
Cone6ag1296 Cone-Chr6:10408117 Cone9ag1249 Cone-Chr9:9190995 5.94E-257 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82959 PF12819 Malectin_like 1.80E-62 CL0202 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1296 K08867 - vvi:100259251 627.476