Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1303 ATGGATACTCGAGGTAGACTCGTTGCTGGTTCTCACAATCGGAACGAGTTTGTTCTCATAAATGCAGATGAAAATGGCCGGATCAAATCAGTGAAGGAATTGAGTGGGCAAGTATGTCAGATTTGTGGGGATGAGATAGAGATAACAGTAGAAGGGGAGCTCTTTGTTGCTTGCAATGAATGTGCTTTTCCTGTTTGTAGACCTTGTTATGAGTATGAGAGACGAGAAGGCAATCAAGCTTGTCCTCAGTGTAAAACCAGATACAAGCGCCTCAAAGGTAGTCCAAGAGTTGAAGATGATGAAGAAGAGGATGATATTGACGATTTGGACAATGAGTTTCACTATGACTATGCTGATGACATGGATGGCATGGGAACTCATCAAGCTGCCGAGGCAATGCTCTCGGCTCGTCTCAATACTGGCCGTGGGTCCCACATGAATGGTTCTGGAATCCCGATGCACTCAGACCATCAGTCCGCTGCTCCTCTTGGTTCTGGGATCCCTCTTCTTACTTATGGCGAGGAGGATTCAGAAATTTCTTCTGATAAACATGCTCTCATTGTGCCTCCATTTATGGGCCATGGAAACAGAGTCCATCCTATGCCTTTTCCCGATCTGTCAGTTCCCTTGCAACCAAGAGCAATGGCTCCTAAGAAAGATATAGCCGTGTACGGGTACGGAAGTGTGGCATGGAAGGATCGAATGGAAGATTGGAAGAAACGGCAGAATGAAACACTTGAAGTGGTAAAGCACCAAGGAGGAAATAATGGTGAAAACTTTGATGGAGATGGAGATGGAGATGATCCTGATTTGCCAGTGATGGATGAAGGTCGGCAACCACTTTCACGGAAACTACCAGTCCCTTCAAGCAAGATAAATCCATATAGATTGATCATTATTCTTCGGCTTGTTATTTTGGGCGTCTTCTTCCATTATAGAATTCGTCATCCGGTTAAGGATGCCTATGGTTTGTGGTTAACTTCTGTGATATGTGAGATATGGTTTGGCGTATCCTGGATTCTGGATCAGTTCCCTAAATGGTACCCAATTCGACGCGAAACATATCTTGATCGGCTTTCATTGAGGTATGAAAAAGAAGGGAAGCCTTCTGGGTTAGCCAATGTAGACATCTTTGTAAGTACGGTTGATCCGTTAAAAGAACCTCCATTGATCACGGCAAACACGGTTCTTTCTATCCTGGCCGTTGATTACCCGGTTGAGAAAGTCTCTTGCTACGTCTCAGATGATGGTGCAGCAATGTTAACATTTGAAGCACTTTCCGAGACATCTGAATTTGCTCGAAAATGGACCCCTTTTTGTAAAAAATATAACATCGAACCGCGGGCCCCGGAATGGTACTTCTGTCAGAAAATCGACTATTTGAAGAACAAAGTTCACCCAGCCTTTGTCAGGGAAAGACGTGCAATGAAGAGAGAATATGAAGAGTTTAAAGTGAGGATAAATGGGTTGGTGGCCATGGCGCAGAAGGTTCCGGAAGATGGCTGGACGATGCAGGATGGGACTCCATGGCCTGGGAACAATGTGCGGGACCACCCGGGCATGATTCAAGTCTTCCTTGGCCATAGTGGAGTTAGGGATATGGAAGGAAATGAGCTACCTCGTCTTGTTTATGTTTCTCGTGAAAAGAGGCCCGGATTTGAGCATCACAAGAAAGCTGGTGCCATGAATTCTCTGGTGCGAGTTTCAGCTATTCTGTCAAACGCTCCTTATCTTTTGAATGTGGACTGTGATCATTATATTAACAACAGCAAGGCTCTAAGAGAGGCCATGTGTTTCATGATGGACCCCACATCAGGGAAGAAAGTTTGCTATGTGCAATTCCCGCAAAGATTTGATGGGATCGATCGGCATGATAGATACTCAAACCGGAATGTTGTATTCTTCGATATCAATATGAAAGGATTGGATGGAATACAAGGACCGATATATGTTGGAACAGGTTGTGTCTTTAGAAGGCAAGCACTGTATGGATTTGATGCACCGGTTAAGAAGAAGCCACCCACTAAAACATGCAACTGTTTGCCGAAATGGTGCTGTCTTTGTTGTGGTTCGAGAAAGGGCAAGAAAGGAAAAGCGAATAATGAAAAGAAGAAGAAGGCGAAGAACAGGGAAGCATCAAAACAAATACATGCACTTGAGAATATGGGAGATGAACTAAACTCACAGAAATCAGCAAATATGTCCCAACAAATAAAGCTAGAGAAAAAATTCGGGCAATCTCCTGTATTTGTTTTCTCCACATTAATTGAAGATGGTGGGGTCCCACTAGAAGTGAGTCCAGCCTCACTCCTTAGAGAGGCCATCCAGGTCATTAGTTGTGGCTACGAGGATAAAACCGAATGGGGAAAAGAGGTTGGCTGGATTTATGGATCGGTGACTGAAGATATCTTGACTGGGTTTAAGATGCACTGTCATGGATGGAGATCGGTTTATTGTATACCGAAGAGGCCTGCATTTAAAGGGTCCGCTCCTATAAACCTTTCGGATCGGTTACACCAGGTTTTAAGGTGGGCCCTTGGATCTGTTGAGATATTCTTGAGTAGACATTGTCCGATTTGGTATGGTTATGGAGGTGGACTGAAGTGGTTGGAACGGTTTTCGTATATAAACTCGGTTGTTTATCCATGGACCTCTATTCCTTTGGTCGTTTATTGCAGCTTGCCCGCTATTTGTCTTCTTACCGGAAAATTCATTGTCCCTGAGATAAGCAACTATGCCAGTCTAGTTTTCATCGCCCTCTTCATATCCATAGCGGCAACAGGTATTCTTGAGATGCAATGGGGTGGGGTTGGGATTGATGATTGGTGGAGAAACGAGCAGTTTTGGGTAATAGGAGGCGTCTCTTCTCATCTATTTGCTCTAATCCAAGGTCTGCTCAAAGTACTGGGCGGAGTAAGCACAAATTTTACTGTTACTTCAAAAGCAGCCGATGATGGAGAGTTTTCCGAGCTCTATATTTTCAAGTGGACATCATTGTTAATACCTCCTACCACTCTACTGATCATAAATATTGTGGGGGTAGTCGTAGGCATTTCGGATGCTATCAATAACGGGTACGACTCATGGGGCCCGCTTTTCGGGAGGCTGTTTTTCGCCTTGTGGGTCATTCTCCATCTCTATCCTTTCCTTAAGGGTCTGCTTGGCAAACAAGATAGGTTACCAACCATTATTATTGTTTGGTCGATCCTGTTAGCCTCCATATTGACGCTTTTGTGGGTCCGGGTCAACCCGTTCGTTTCGAGAGAAGGCCCTGTTTTGGAAGTTTGTGGGTTGAATTGTGATGATTAG 3309 44.42 MDTRGRLVAGSHNRNEFVLINADENGRIKSVKELSGQVCQICGDEIEITVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEDDEEEDDIDDLDNEFHYDYADDMDGMGTHQAAEAMLSARLNTGRGSHMNGSGIPMHSDHQSAAPLGSGIPLLTYGEEDSEISSDKHALIVPPFMGHGNRVHPMPFPDLSVPLQPRAMAPKKDIAVYGYGSVAWKDRMEDWKKRQNETLEVVKHQGGNNGENFDGDGDGDDPDLPVMDEGRQPLSRKLPVPSSKINPYRLIIILRLVILGVFFHYRIRHPVKDAYGLWLTSVICEIWFGVSWILDQFPKWYPIRRETYLDRLSLRYEKEGKPSGLANVDIFVSTVDPLKEPPLITANTVLSILAVDYPVEKVSCYVSDDGAAMLTFEALSETSEFARKWTPFCKKYNIEPRAPEWYFCQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDMEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAILSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPVKKKPPTKTCNCLPKWCCLCCGSRKGKKGKANNEKKKKAKNREASKQIHALENMGDELNSQKSANMSQQIKLEKKFGQSPVFVFSTLIEDGGVPLEVSPASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLVVYCSLPAICLLTGKFIVPEISNYASLVFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALIQGLLKVLGGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVVVGISDAINNGYDSWGPLFGRLFFALWVILHLYPFLKGLLGKQDRLPTIIIVWSILLASILTLLWVRVNPFVSREGPVLEVCGLNCDD 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10472077 10478194 + Conep06aG0135200.1 Cone6ag1303 440187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1303 1102 Pfam Cellulose synthase 375 1089 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone6ag1303 1102 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cone6ag1303 1102 Coils Coil 702 729 - -
Cone6ag1303 1102 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 524 667 IPR029044 -
Cone6ag1303 1102 MobiDBLite consensus disorder prediction 250 284 - -
Cone6ag1303 1102 CDD mRING-HC-C4C4_CesA 37 87 - -
Cone6ag1303 1102 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 295 1070 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone6ag1303 1102 FunFam Cellulose synthase 492 666 - -
Cone6ag1303 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cone6ag1303 1102 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cone6ag1303 1102 FunFam Cellulose synthase 21 112 - -
Cone6ag1303 1102 SUPERFAMILY Nucleotide-diphospho-sugar transferases 389 920 IPR029044 -
Cone6ag1303 1102 SUPERFAMILY RING/U-box 24 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0847 Cone-Chr14:5369830 Cone6ag1303 Cone-Chr6:10472077 0 dispersed
Cone4ag1800 Cone-Chr4:13064719 Cone6ag1303 Cone-Chr6:10472077 0 dispersed
Cone6ag1303 Cone-Chr6:10472077 Cone7ag0557 Cone-Chr7:2678513 0 dispersed
Cone4ag1486 Cone-Chr4:11633123 Cone6ag1303 Cone-Chr6:10472077 0 wgd
Cone6ag1303 Cone-Chr6:10472077 Cone7ag1458 Cone-Chr7:10292094 0 wgd
Cone6ag1303 Cone-Chr6:10472077 Cone9ag1255 Cone-Chr9:9240088 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1303 K10999 - rcu:8273696 1971.44