Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag1303 | ATGGATACTCGAGGTAGACTCGTTGCTGGTTCTCACAATCGGAACGAGTTTGTTCTCATAAATGCAGATGAAAATGGCCGGATCAAATCAGTGAAGGAATTGAGTGGGCAAGTATGTCAGATTTGTGGGGATGAGATAGAGATAACAGTAGAAGGGGAGCTCTTTGTTGCTTGCAATGAATGTGCTTTTCCTGTTTGTAGACCTTGTTATGAGTATGAGAGACGAGAAGGCAATCAAGCTTGTCCTCAGTGTAAAACCAGATACAAGCGCCTCAAAGGTAGTCCAAGAGTTGAAGATGATGAAGAAGAGGATGATATTGACGATTTGGACAATGAGTTTCACTATGACTATGCTGATGACATGGATGGCATGGGAACTCATCAAGCTGCCGAGGCAATGCTCTCGGCTCGTCTCAATACTGGCCGTGGGTCCCACATGAATGGTTCTGGAATCCCGATGCACTCAGACCATCAGTCCGCTGCTCCTCTTGGTTCTGGGATCCCTCTTCTTACTTATGGCGAGGAGGATTCAGAAATTTCTTCTGATAAACATGCTCTCATTGTGCCTCCATTTATGGGCCATGGAAACAGAGTCCATCCTATGCCTTTTCCCGATCTGTCAGTTCCCTTGCAACCAAGAGCAATGGCTCCTAAGAAAGATATAGCCGTGTACGGGTACGGAAGTGTGGCATGGAAGGATCGAATGGAAGATTGGAAGAAACGGCAGAATGAAACACTTGAAGTGGTAAAGCACCAAGGAGGAAATAATGGTGAAAACTTTGATGGAGATGGAGATGGAGATGATCCTGATTTGCCAGTGATGGATGAAGGTCGGCAACCACTTTCACGGAAACTACCAGTCCCTTCAAGCAAGATAAATCCATATAGATTGATCATTATTCTTCGGCTTGTTATTTTGGGCGTCTTCTTCCATTATAGAATTCGTCATCCGGTTAAGGATGCCTATGGTTTGTGGTTAACTTCTGTGATATGTGAGATATGGTTTGGCGTATCCTGGATTCTGGATCAGTTCCCTAAATGGTACCCAATTCGACGCGAAACATATCTTGATCGGCTTTCATTGAGGTATGAAAAAGAAGGGAAGCCTTCTGGGTTAGCCAATGTAGACATCTTTGTAAGTACGGTTGATCCGTTAAAAGAACCTCCATTGATCACGGCAAACACGGTTCTTTCTATCCTGGCCGTTGATTACCCGGTTGAGAAAGTCTCTTGCTACGTCTCAGATGATGGTGCAGCAATGTTAACATTTGAAGCACTTTCCGAGACATCTGAATTTGCTCGAAAATGGACCCCTTTTTGTAAAAAATATAACATCGAACCGCGGGCCCCGGAATGGTACTTCTGTCAGAAAATCGACTATTTGAAGAACAAAGTTCACCCAGCCTTTGTCAGGGAAAGACGTGCAATGAAGAGAGAATATGAAGAGTTTAAAGTGAGGATAAATGGGTTGGTGGCCATGGCGCAGAAGGTTCCGGAAGATGGCTGGACGATGCAGGATGGGACTCCATGGCCTGGGAACAATGTGCGGGACCACCCGGGCATGATTCAAGTCTTCCTTGGCCATAGTGGAGTTAGGGATATGGAAGGAAATGAGCTACCTCGTCTTGTTTATGTTTCTCGTGAAAAGAGGCCCGGATTTGAGCATCACAAGAAAGCTGGTGCCATGAATTCTCTGGTGCGAGTTTCAGCTATTCTGTCAAACGCTCCTTATCTTTTGAATGTGGACTGTGATCATTATATTAACAACAGCAAGGCTCTAAGAGAGGCCATGTGTTTCATGATGGACCCCACATCAGGGAAGAAAGTTTGCTATGTGCAATTCCCGCAAAGATTTGATGGGATCGATCGGCATGATAGATACTCAAACCGGAATGTTGTATTCTTCGATATCAATATGAAAGGATTGGATGGAATACAAGGACCGATATATGTTGGAACAGGTTGTGTCTTTAGAAGGCAAGCACTGTATGGATTTGATGCACCGGTTAAGAAGAAGCCACCCACTAAAACATGCAACTGTTTGCCGAAATGGTGCTGTCTTTGTTGTGGTTCGAGAAAGGGCAAGAAAGGAAAAGCGAATAATGAAAAGAAGAAGAAGGCGAAGAACAGGGAAGCATCAAAACAAATACATGCACTTGAGAATATGGGAGATGAACTAAACTCACAGAAATCAGCAAATATGTCCCAACAAATAAAGCTAGAGAAAAAATTCGGGCAATCTCCTGTATTTGTTTTCTCCACATTAATTGAAGATGGTGGGGTCCCACTAGAAGTGAGTCCAGCCTCACTCCTTAGAGAGGCCATCCAGGTCATTAGTTGTGGCTACGAGGATAAAACCGAATGGGGAAAAGAGGTTGGCTGGATTTATGGATCGGTGACTGAAGATATCTTGACTGGGTTTAAGATGCACTGTCATGGATGGAGATCGGTTTATTGTATACCGAAGAGGCCTGCATTTAAAGGGTCCGCTCCTATAAACCTTTCGGATCGGTTACACCAGGTTTTAAGGTGGGCCCTTGGATCTGTTGAGATATTCTTGAGTAGACATTGTCCGATTTGGTATGGTTATGGAGGTGGACTGAAGTGGTTGGAACGGTTTTCGTATATAAACTCGGTTGTTTATCCATGGACCTCTATTCCTTTGGTCGTTTATTGCAGCTTGCCCGCTATTTGTCTTCTTACCGGAAAATTCATTGTCCCTGAGATAAGCAACTATGCCAGTCTAGTTTTCATCGCCCTCTTCATATCCATAGCGGCAACAGGTATTCTTGAGATGCAATGGGGTGGGGTTGGGATTGATGATTGGTGGAGAAACGAGCAGTTTTGGGTAATAGGAGGCGTCTCTTCTCATCTATTTGCTCTAATCCAAGGTCTGCTCAAAGTACTGGGCGGAGTAAGCACAAATTTTACTGTTACTTCAAAAGCAGCCGATGATGGAGAGTTTTCCGAGCTCTATATTTTCAAGTGGACATCATTGTTAATACCTCCTACCACTCTACTGATCATAAATATTGTGGGGGTAGTCGTAGGCATTTCGGATGCTATCAATAACGGGTACGACTCATGGGGCCCGCTTTTCGGGAGGCTGTTTTTCGCCTTGTGGGTCATTCTCCATCTCTATCCTTTCCTTAAGGGTCTGCTTGGCAAACAAGATAGGTTACCAACCATTATTATTGTTTGGTCGATCCTGTTAGCCTCCATATTGACGCTTTTGTGGGTCCGGGTCAACCCGTTCGTTTCGAGAGAAGGCCCTGTTTTGGAAGTTTGTGGGTTGAATTGTGATGATTAG | 3309 | 44.42 | MDTRGRLVAGSHNRNEFVLINADENGRIKSVKELSGQVCQICGDEIEITVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEDDEEEDDIDDLDNEFHYDYADDMDGMGTHQAAEAMLSARLNTGRGSHMNGSGIPMHSDHQSAAPLGSGIPLLTYGEEDSEISSDKHALIVPPFMGHGNRVHPMPFPDLSVPLQPRAMAPKKDIAVYGYGSVAWKDRMEDWKKRQNETLEVVKHQGGNNGENFDGDGDGDDPDLPVMDEGRQPLSRKLPVPSSKINPYRLIIILRLVILGVFFHYRIRHPVKDAYGLWLTSVICEIWFGVSWILDQFPKWYPIRRETYLDRLSLRYEKEGKPSGLANVDIFVSTVDPLKEPPLITANTVLSILAVDYPVEKVSCYVSDDGAAMLTFEALSETSEFARKWTPFCKKYNIEPRAPEWYFCQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDMEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAILSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPVKKKPPTKTCNCLPKWCCLCCGSRKGKKGKANNEKKKKAKNREASKQIHALENMGDELNSQKSANMSQQIKLEKKFGQSPVFVFSTLIEDGGVPLEVSPASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLVVYCSLPAICLLTGKFIVPEISNYASLVFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALIQGLLKVLGGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVVVGISDAINNGYDSWGPLFGRLFFALWVILHLYPFLKGLLGKQDRLPTIIIVWSILLASILTLLWVRVNPFVSREGPVLEVCGLNCDD | 1102 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10472077 | 10478194 | + | Conep06aG0135200.1 | Cone6ag1303 | 440187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag1303 | 1102 | Pfam | Cellulose synthase | 375 | 1089 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Cone6ag1303 | 1102 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Cone6ag1303 | 1102 | Coils | Coil | 702 | 729 | - | - | |
Cone6ag1303 | 1102 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 524 | 667 | IPR029044 | - | |
Cone6ag1303 | 1102 | MobiDBLite | consensus disorder prediction | 250 | 284 | - | - | |
Cone6ag1303 | 1102 | CDD | mRING-HC-C4C4_CesA | 37 | 87 | - | - | |
Cone6ag1303 | 1102 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 295 | 1070 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cone6ag1303 | 1102 | FunFam | Cellulose synthase | 492 | 666 | - | - | |
Cone6ag1303 | 1102 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - | |
Cone6ag1303 | 1102 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
Cone6ag1303 | 1102 | FunFam | Cellulose synthase | 21 | 112 | - | - | |
Cone6ag1303 | 1102 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 389 | 920 | IPR029044 | - | |
Cone6ag1303 | 1102 | SUPERFAMILY | RING/U-box | 24 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0847 | Cone-Chr14:5369830 | Cone6ag1303 | Cone-Chr6:10472077 | 0 | dispersed | |
Cone4ag1800 | Cone-Chr4:13064719 | Cone6ag1303 | Cone-Chr6:10472077 | 0 | dispersed | |
Cone6ag1303 | Cone-Chr6:10472077 | Cone7ag0557 | Cone-Chr7:2678513 | 0 | dispersed | |
Cone4ag1486 | Cone-Chr4:11633123 | Cone6ag1303 | Cone-Chr6:10472077 | 0 | wgd | |
Cone6ag1303 | Cone-Chr6:10472077 | Cone7ag1458 | Cone-Chr7:10292094 | 0 | wgd | |
Cone6ag1303 | Cone-Chr6:10472077 | Cone9ag1255 | Cone-Chr9:9240088 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag1303 | K10999 | - | rcu:8273696 | 1971.44 |