Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1315 ATGAAACCCCATCTCAAAAGATCCTCAAACGTGTCTCTCATCTTCCACTTTCTCTCTCTTGCTCTGTTCTTCTTCCATGCTGCCCCGTCACCTTCCCCCTCTTCTTCTTCCCAAGATACACAGAAGCTACTTACCTTCCTAAATTCTCTTCCCAACCCTAACTTCCTCAAAACATGGCTGCCCAACCAAAACCCATGCTCATTTACCGGCATTTCCTGCAAAGAAAACAGAGTATCCGCTATAGACCTCAGCTCCATCTCCTTAAGCTCAAACTTCTATCTCATCTCTTCCACTCTCTTGACCCTCGAAAAACTCGAAACTCTCTCTCTAAAATCCACTAACCTCACTGGCTCCATCTCCCTCTCTGGATCCAAGTGCAGCTCCCTCTTAACCGCCATAGATCTTTCTCTAAACTCTCTCTTCGGCCCTCTCTCCGATCTCTCCAACTTCTCTCCCTGTTCGGGCTTAAAATCTCTAAACCTCTCCTCAAACTTACTCGATTTCTCAGTTAAGGACTCCTCGACTGGACTGAAGCTGAACTTACAGGTCCTAGATCTTTCTTACAACAGGATTGTCGGAACGAATATCGTCCCTTGGATCTTATCTGGCGGCTGCGATGAAATCCAGCATTTGTCGCTAAAGGGTAACAAAGTCGCTGGCGAAGTGGTGAACTTTTCCGCATGCGTCAATCTCGAGCTTCTCGACCTTTCCGGAAACAACTTCTCCCTACGCAGCTTCCCTTCTTTCGGCGACTGTTCGAGTTTAAACTCTCTCGATATCTCCGCTAATAAAATTTCCGGTGATATCTCACGTTCCGTTGCTAATTGTCAGAAGCTCACTTTCCTCAACCTCTCAAGCAACCAATTTTCCGGCCAAATCCCATCTTCTTTCCCGCCCAAAAGTCTGCAGAATCTCTATCTTGCGAATAATGATTTTCAGGGTGATATTCCTTCAAGCCTTGCCGATTTATGTTCGAGTCTGATCGAGCTGGATCTTTCCTCGAACAATCTATCAGGTGGGGTTCCAGATTCCTTAGGCTCCTGCTCTCTGCTTCAATCTTTGGTAATTTCGGGCAATAATTTATCTGGTCAGCTTCCCGTTTCAGTTTTTACGAAAATGAGTAATTTGAAAATACTCTCTGTTTCTGACAATAAGTTTTCGGGTTACTTGCCGGATTCTCTTTCCCTGCTCGATAATTTGGAGTATTTGGATCTAAGCTCGAATAATTTTTCTGGGTCGATTCCTGTTGAGCTTTGTCAGAACTCTAAGAAGAGAAATTTGAAAGAACTTTTTCTTCAGAACAATTTCTTCACAGGATCTATCCCGCCTTCTCTTTGCAACTGTTCAGAGCTTGTTTCCTTGGATTTGAGCTTCAATTTCTTAACTGGTGCGATCCCGTCAAGCTTAGGATCGCTTACCAAGCTCAGAAATTTGATAATCTGGTTGAATCAAATCTCGGGTGAAATCCCACAAGAGCTAATGTACATTCAATCGCTCGAGAATCTCATTCTGGATTTCAACGAGATTACCGGACCGATTCCTTTGGGCCTAAGCAACTGCACGAGCTTGAACTGGATCTCACTATCAAACAACAGGTTGACTGGAGAGATACCAGGCTGGATTGGGCATTTGTCAAGCCTTGCTATTCTCAAGCTGAGTAACAACTCCTTTTACGGCCGGGTCCCGCCCGAGTTAGGAGATTGTCGGAGCTTGATATGGTTGGATCTTAACACCAACTTTTTGAATGGATCAATCCCGCCTGAGCTATTCAAGCAATCTGGAAATATTGCGGTTAATTTCATTTCCGGAAAGACCTATGCTTATATTAAGAATGATGGGAGTGAAGCATGTCATGGAGCAGGAAATTTGCTTGAATTCGCTGGGATTAGACAGGAACAAGTGGGCCGGATTTCAACAAGGAGCCCGTGCAATTTCACCAGGGTTTATCGAGGTTTGACGCAGCCCACATTTAACCATAATGGGTCAATGATTTTTCTTGATATTTCTCACAATTTGTTGTCCGGAATGATCCCGAAAGAGATTAGCTCTGCAAATTATCTCTACATCTTGAATTTGGGCCATAACAACATTTCTGGAACAATCCCAGAAGAGCTTGGAAATCTCCGGAACCTCAACATTCTTGATCTTTCAAGCAACCAGCTTGATGGGCCAATCCCGAATTCCTTGGCGAGCCTTTCTTTGCTTACTGAAATCAATCTTTCCAACAATCTTCTCAATGGGTCCATTCCTGAATCGGGGCAGTTCGAAACTTTTCCGGCAGCTGGGTTTTTGAACAATGCCGGGCTTTGTGGGTACCCGCTTCCAAAATGTGGGTCCAATCCTGCATTAGTTGTATCTCAGCACCAGAAGTCTCATAGGAGACAAGCTTCCCTTGCTGGTAGTGTAGCAATGGGGTTACTGTTCTCCCTCTTTTGCATATTTGGTTTGGTCATTGTGGCCATAGAGACAAAGAAGAGACGGAAAAAGAAAGAATCGGTCTTGGAAGCTTATATCGAAAACCACTCCCATTCCGGCACTAACAATAACGTGAGCTGGAAGCTAACTAGTGCTCGAGAAGCACTAAGCATAAACCTAGCCACGTTTGAAAAACCGCTTCGGAAGCTCACATTTGCAGACCTTCTAGAAGCCACGAATGGGTTCCATAACGACAGCCTGGTGGGGTCTGGTGGTTTCGGAGACGTTTACAAGGCTCAACTAAAAGACGGAAGCGTTGTGGCCATAAAGAAACTCATTCACATAAGCGGTCAAGGGGATAGAGAATTCATGGCCGAAATGGAAACCATTGGAAAAATCAAGCACCGCAACCTAGTCCCTCTACTCGGTTATTGCAAAGTAGGCGAGGAACGGCTACTAGTCTATGAGTACATGAAATTCGGAAGCTTAGAAGATGTATTACATGACCCAAAGAAAGCCGGGATAAAACTAAATTGGTCAGCCCGAAGAAAGATTGCTATCGGTGCAGCCAGGGGGTTAGCATTCCTTCACCATAATTGCATTCCCCATATAATCCATCGCGATATGAAATCGAGCAATGTCTTGCTCGATGATAATTTAGAAGCTAGGGTTTCGGATTTCGGAATGGCGAGGCTAATGAGTGCAATGGACACTCATTTGAGTGTAAGCACCTTAGCAGGTACTCCGGGGTATGTCCCACCGGAATATTACCAAAGTTTCCGATGTTCAACAAGAGGCGATGTTTATAGTTATGGGGTGGTTTTGCTCGAGCTTCTGACGGGGAGGCAGCCCACTAACTCGGATGATTTTGGGGATAATAATCTAGTGGGATGGGTGAAGCAACATGCTAAGTTGAATATAAGTGATGTTTTTGATAAGGAGCTTATGAAGGAGGATTCGACGCTTGAGATTGAGCTATTGCAGCATTTAGAGGTGGCTTGTGCTTGCTTGGATGATAGGCCATGGAGGCGGCCCACCATGATTCAAGTCATGGCAATGTTTAAGGGGATCCAAGCAGGGTCCGGAATTGATTCACAATCGACAATTGCTTCGAGTGATGGAGGGTTTGGTACTGTGGAGGAAGTGGAGATGAGTATCAAGGAAGTTCCGGAACCGGTTAATAAGCAATAG 3606 44.9 MKPHLKRSSNVSLIFHFLSLALFFFHAAPSPSPSSSSQDTQKLLTFLNSLPNPNFLKTWLPNQNPCSFTGISCKENRVSAIDLSSISLSSNFYLISSTLLTLEKLETLSLKSTNLTGSISLSGSKCSSLLTAIDLSLNSLFGPLSDLSNFSPCSGLKSLNLSSNLLDFSVKDSSTGLKLNLQVLDLSYNRIVGTNIVPWILSGGCDEIQHLSLKGNKVAGEVVNFSACVNLELLDLSGNNFSLRSFPSFGDCSSLNSLDISANKISGDISRSVANCQKLTFLNLSSNQFSGQIPSSFPPKSLQNLYLANNDFQGDIPSSLADLCSSLIELDLSSNNLSGGVPDSLGSCSLLQSLVISGNNLSGQLPVSVFTKMSNLKILSVSDNKFSGYLPDSLSLLDNLEYLDLSSNNFSGSIPVELCQNSKKRNLKELFLQNNFFTGSIPPSLCNCSELVSLDLSFNFLTGAIPSSLGSLTKLRNLIIWLNQISGEIPQELMYIQSLENLILDFNEITGPIPLGLSNCTSLNWISLSNNRLTGEIPGWIGHLSSLAILKLSNNSFYGRVPPELGDCRSLIWLDLNTNFLNGSIPPELFKQSGNIAVNFISGKTYAYIKNDGSEACHGAGNLLEFAGIRQEQVGRISTRSPCNFTRVYRGLTQPTFNHNGSMIFLDISHNLLSGMIPKEISSANYLYILNLGHNNISGTIPEELGNLRNLNILDLSSNQLDGPIPNSLASLSLLTEINLSNNLLNGSIPESGQFETFPAAGFLNNAGLCGYPLPKCGSNPALVVSQHQKSHRRQASLAGSVAMGLLFSLFCIFGLVIVAIETKKRRKKKESVLEAYIENHSHSGTNNNVSWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHISGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKFGSLEDVLHDPKKAGIKLNWSARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDDNLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTRGDVYSYGVVLLELLTGRQPTNSDDFGDNNLVGWVKQHAKLNISDVFDKELMKEDSTLEIELLQHLEVACACLDDRPWRRPTMIQVMAMFKGIQAGSGIDSQSTIASSDGGFGTVEEVEMSIKEVPEPVNKQ 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10561015 10564768 + Conep06aG0136700.1 Cone6ag1315 440199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1315 1201 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1009 1021 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1315 1201 SUPERFAMILY L domain-like 63 322 - -
Cone6ag1315 1201 FunFam Brassinosteroid LRR receptor kinase 963 1164 - -
Cone6ag1315 1201 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 422 513 - -
Cone6ag1315 1201 ProSiteProfiles Leucine-rich repeat profile. 399 421 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 ProSitePatterns Protein kinases ATP-binding region signature. 893 916 IPR017441 GO:0005524(InterPro)
Cone6ag1315 1201 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Cone6ag1315 1201 FunFam Leucine-rich repeat receptor protein kinase EMS1 514 605 - -
Cone6ag1315 1201 SMART serkin_6 887 1159 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1315 1201 Pfam Leucine rich repeat 687 745 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine rich repeat 365 410 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine rich repeat 301 361 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 SUPERFAMILY L domain-like 650 752 - -
Cone6ag1315 1201 FunFam serine/threonine-protein kinase BRI1-like 2 848 962 - -
Cone6ag1315 1201 ProSiteProfiles Protein kinase domain profile. 887 1162 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1315 1201 Pfam Protein kinase domain 888 1157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1315 1201 Gene3D Ribonuclease Inhibitor 43 777 IPR032675 -
Cone6ag1315 1201 FunFam Serine/threonine-protein kinase BRI1-like 1 601 658 - -
Cone6ag1315 1201 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine Rich Repeat 278 297 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine Rich Repeat 180 198 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cone6ag1315 1201 SMART LRR_typ_2 397 421 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 373 396 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 732 757 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 276 304 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 544 568 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 425 448 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 324 348 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 180 203 IPR003591 -
Cone6ag1315 1201 SMART LRR_typ_2 708 731 IPR003591 -
Cone6ag1315 1201 CDD STKc_IRAK 893 1162 - -
Cone6ag1315 1201 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 655 1162 IPR050647 -
Cone6ag1315 1201 Gene3D - 599 659 - -
Cone6ag1315 1201 SUPERFAMILY Protein kinase-like (PK-like) 873 1163 IPR011009 -
Cone6ag1315 1201 SUPERFAMILY RNI-like 269 588 - -
Cone6ag1315 1201 Gene3D Phosphorylase Kinase; domain 1 847 962 - -
Cone6ag1315 1201 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 196 421 - -
Cone6ag1315 1201 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 655 777 - -
Cone6ag1315 1201 Pfam Brassinosteroid receptor island domain 594 658 IPR045381 -
Cone6ag1315 1201 Gene3D Transferase(Phosphotransferase) domain 1 963 1164 - -
Cone6ag1315 1201 PRINTS Leucine-rich repeat signature 400 413 - -
Cone6ag1315 1201 PRINTS Leucine-rich repeat signature 708 721 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1278 Cone-Chr14:10219443 Cone6ag1315 Cone-Chr6:10561015 1.16E-189 dispersed
Cone15ag1304 Cone-Chr15:10182636 Cone6ag1315 Cone-Chr6:10561015 6.27E-195 dispersed
Cone1ag1147 Cone-Chr1:55682615 Cone6ag1315 Cone-Chr6:10561015 2.09E-100 dispersed
Cone3ag0598 Cone-Chr3:2962451 Cone6ag1315 Cone-Chr6:10561015 2.65E-75 dispersed
Cone5ag0856 Cone-Chr5:3659828 Cone6ag1315 Cone-Chr6:10561015 6.91E-102 dispersed
Cone6ag0332 Cone-Chr6:1569748 Cone6ag1315 Cone-Chr6:10561015 5.84E-162 dispersed
Cone6ag1315 Cone-Chr6:10561015 Cone9ag0368 Cone-Chr9:1634768 3.50E-167 dispersed
Cone12ag1153 Cone-Chr12:9188170 Cone6ag1315 Cone-Chr6:10561015 7.87E-37 wgd
Cone6ag1315 Cone-Chr6:10561015 Cone8ag0040 Cone-Chr8:229688 1.20E-37 wgd
Cone6ag1315 Cone-Chr6:10561015 Cone8ag1202 Cone-Chr8:10219306 5.94E-37 wgd
Cone6ag1315 Cone-Chr6:10561015 Cone9ag1263 Cone-Chr9:9346800 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82961 PF00179 UQ_con 1.40E-24 CL0208 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1315 K13415 - csv:101209118 1709.89