Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1317 ATGGTAGATTTTGAGGATATCCAGCCCCTTGTTCTTGACAATGGAACCGGAATGATGAAGGCTGGATTTGCGGGGGACGATGCTCCTAGGTCAGTTTTTCCTAGTATCGTGGGTATACACAGACGCACCGATTTCATGGTTGGGATGGGCAAGAGAGATGCTTATGTTGGCGATGAAGCCCAATCCAGAAGAGGTATCCTTGACTTGAAATATCCTATAGAGCGTGGAATAGTCAGAAACTGGGATGACATGGAAAAGATCTGGCGTCACACGTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAACACCCAGTTCTTTTGACAGAGGCTGCACTCAATCCCAAGCGTAACCGAGAAAAGATGACCCATGTCATGTTTGAAAAATTTAACGTTCCTGCCATGTACGTTTCAATCCAGGCCATTCTAGCCCTCTATGCCAGTGGCCGTACAACCGGTATTGTGCTCGATTCTGGTGCTGGTGTGAGTCACACTGTGCCCATTTACGAGGGATCTATTCTCCGTCAAGCTATCCTCCGTTCGGATCTTGGTGGACATGATGTAACCGATTGTTTGATGAAGATTCTTACTGAAAGAGGTCACATGATCACCAACAGTGCTAACTGGGAAATCGTACGTGACATAAAGGAAAAAGTTGCATACGTTGCTCTTGACTATAAGGAAGAACTTGAAACCGCAAAGAGCAGCTCCTCTGTTCAACTGACGTATGAATTGCCTGATGGACAAGTCATTGCAATTGGAGCTGAGAGATTCTGTTGCCCGGAAGTACTTTTCCAGCCATCTCATCTCGAAATGGAAGCTGCTGGAATCCATGAGATTACCTACAACTCCATTATGAAGTGTGATGTGGATATCAGGAAGGATCTGTACGGAAACATTGTTCTTAGTGGTGGTTCTACCATGTTCGGTGGCTTTGCTGACAGGATGAGCAAGGAGATCACTGCCCTTGCACCTAGCAGGATGAAGGTTAAGGTTGTGGCCCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATCCTTGCATCCCTCGACAGCTTCCAGCAGAGTTGGATCTCAAAGGGCGAGTATGATGAGTCAGGTCCATCCATTGTCCACAGGAAGTGCATCTGA 1134 46.83 MVDFEDIQPLVLDNGTGMMKAGFAGDDAPRSVFPSIVGIHRRTDFMVGMGKRDAYVGDEAQSRRGILDLKYPIERGIVRNWDDMEKIWRHTFYNELRVAPEEHPVLLTEAALNPKRNREKMTHVMFEKFNVPAMYVSIQAILALYASGRTTGIVLDSGAGVSHTVPIYEGSILRQAILRSDLGGHDVTDCLMKILTERGHMITNSANWEIVRDIKEKVAYVALDYKEELETAKSSSSVQLTYELPDGQVIAIGAERFCCPEVLFQPSHLEMEAAGIHEITYNSIMKCDVDIRKDLYGNIVLSGGSTMFGGFADRMSKEITALAPSRMKVKVVAPPERKYSVWIGGSILASLDSFQQSWISKGEYDESGPSIVHRKCI 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10591365 10593646 + Conep06aG0136900.1 Cone6ag1317 440201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1317 377 Pfam Actin 5 376 IPR004000 -
Cone6ag1317 377 FunFam Putative actin-related protein 5 341 369 - -
Cone6ag1317 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone6ag1317 377 PANTHER ACTIN 8 369 IPR004000 -
Cone6ag1317 377 FunFam Actin, alpha skeletal muscle 182 273 - -
Cone6ag1317 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone6ag1317 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone6ag1317 377 SMART actin_3 7 377 IPR004000 -
Cone6ag1317 377 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
Cone6ag1317 377 FunFam Actin, alpha skeletal muscle 3 163 - -
Cone6ag1317 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone6ag1317 377 Gene3D - 140 340 - -
Cone6ag1317 377 Gene3D - 10 371 - -
Cone6ag1317 377 PRINTS Actin signature 142 161 IPR004000 -
Cone6ag1317 377 PRINTS Actin signature 86 104 IPR004000 -
Cone6ag1317 377 PRINTS Actin signature 117 130 IPR004000 -
Cone6ag1317 377 PRINTS Actin signature 238 254 IPR004000 -
Cone6ag1317 377 PRINTS Actin signature 28 37 IPR004000 -
Cone6ag1317 377 PRINTS Actin signature 51 62 IPR004000 -
Cone6ag1317 377 FunFam Major actin 259 340 - -
Cone6ag1317 377 CDD NBD_sugar-kinase_HSP70_actin 10 170 - -
Cone6ag1317 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0269 Cone-Chr16:3005547 Cone6ag1317 Cone-Chr6:10591365 5.95E-89 dispersed
Cone6ag1317 Cone-Chr6:10591365 Cone9ag1250 Cone-Chr9:9202192 3.86E-231 dispersed
Cone12ag0043 Cone-Chr12:262455 Cone6ag1317 Cone-Chr6:10591365 1.06E-228 wgd
Cone6ag1317 Cone-Chr6:10591365 Cone8ag0044 Cone-Chr8:248787 9.06E-230 wgd
Cone6ag1317 Cone-Chr6:10591365 Cone9ag1264 Cone-Chr9:9364250 7.59E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1317 K10355 - mtr:11431140 632.484