Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1318 ATGGGGTTGTTTGAGGATCAAGAAGAGACCCCTACACTAATGGGTTTATTTTCTTTTCCTTCAAACATGACCACCTTTTCATCATCATCAGCTCCATTAGGATCGCCATGTAACCAATCTCGAATCAAACCGGTCACCTTCAATGGTAATAATTTTCTTTCTAATTCACAGCACCATGCAGTACCTAATCTCTCTGCAGAAACCCTAATTCTATCATCACCATCCTCTGCAGCAACTCATGATCATGATCATGACCCTCTTATTAAGCACAAAAATCAAGATTTTACTTCTAATACTACTCTACTAGGGTCAGGATCACACCTCCTTTCCTTGCCGCAGAGATCAACTGCAAACCACTCATGGGCATGGGGAGAAGTGGGTGATCCGTACAGCTTGAGTACTAGCAAGAGAAATATTATAACTCGTGGAGAGAATGATCATCAAGATCATCATCATCATTATCATAATTTAGGGGTTTCACCGACGAAGATGAAGAAGATAAAGGGAAGGAGGAAGGTGAGAGAGCCAAGATTTTGCTTCAAGACAATGAGCGATGTGGATGTTCTTGATGATGGTTACAAGTGGAGAAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCCAGGAGCTACTATAGATGCACTCAAGACAGCTGTAGAGTAAAGAAAAGAGTGGAGAGATTAGCCGAGGATCCAAGAATGGTGATAACTACATATGAAGGTAGACACGCTCACTCTCCATCCCACGACGATTTGGAAGATTCTCAACCTTCATCCCACCTTAATAACTTCTTCTGGTAG 804 42.04 MGLFEDQEETPTLMGLFSFPSNMTTFSSSSAPLGSPCNQSRIKPVTFNGNNFLSNSQHHAVPNLSAETLILSSPSSAATHDHDHDPLIKHKNQDFTSNTTLLGSGSHLLSLPQRSTANHSWAWGEVGDPYSLSTSKRNIITRGENDHQDHHHHYHNLGVSPTKMKKIKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDSCRVKKRVERLAEDPRMVITTYEGRHAHSPSHDDLEDSQPSSHLNNFFW 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10613619 10618595 - Conep06aG0137000.1 Cone6ag1318 440202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1318 267 Pfam WRKY DNA -binding domain 190 246 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag1318 267 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag1318 267 FunFam WRKY transcription factor 57 175 249 - -
Cone6ag1318 267 SUPERFAMILY WRKY DNA-binding domain 181 248 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag1318 267 MobiDBLite consensus disorder prediction 241 257 - -
Cone6ag1318 267 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 254 IPR044810 GO:0003700(InterPro)
Cone6ag1318 267 Gene3D WRKY domain 176 242 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag1318 267 MobiDBLite consensus disorder prediction 241 267 - -
Cone6ag1318 267 SMART WRKY_cls 189 248 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1318 Cone-Chr6:10613619 Cone7ag0070 Cone-Chr7:297307 8.49E-28 dispersed
Cone6ag1318 Cone-Chr6:10613619 Cone9ag1265 Cone-Chr9:9395529 9.77E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46385 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1318 - - - 0.0