Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1347 ATGGCGTTCAGGAAAACTCTGGCTCAGCGCTTGTTTAACATATCCAAAATTTCGAATCAGGCGCTGAAAACATGCCGCATTTCATCGCATTCCGCCGCCCGTACTCAGTTTCCACCTGACCCGAACAAATCCAGAATTGCTCTGGACGCCGGAGATGACGGAATATTCAGGCATTTCCTGCACAAGAGGGCGGAGGTACCTTCTTCCGACCTACGACCGTTTCAGATGGGGGAAAACTGGATGGAGAAGCTCAAATCGTTAGGGGTTGGTAGAGACAGGATCCGATTGGATGGTCTGAGTATTCCGGTTCAGGAGAAATCGGAAATCGTGGAGGACGAGGGATTGACGGTGGAGGAGACAAGGAAGTTATTGAAAATGGTGAGGTTGGAGGCAGTGAAATCGAGGCTGAGAGGAATCCAGAAAAGCTGGATTCCGTATTCTGAATTCGTTCAGATCTGTGGAGAAGGTTCGGCGGATCTAGATCGTGAATTAGGGCTCGCGAAAATGCTGGACGAGTCCGGAACGGTTATCGTCTTGGGAAACATCGTCCTCCTCCGACCTGAGCAGGTTGCCAAAGCCATTCAGGGCCTAATCCCCATTCCAGGAACCACCCAAAACGCTACCGCCGAAAAGGAGCTTGAAGCCATGGAGAAGCACAAGGCGGTAATCGACAAAAAGGCGGAAGCCCTCGTCCGTCGCGAGCTCTATTTCGGGCTTAGTTTCTTCCTGGCCCAAACCGCAGCCTTCATGAGGCTCACTTTCTGGGAGCTTACTTGGGACGTAATGGAGCCCATTTGCTACTACGTTGCTTCTACTTATTTTATGGGTGCTTGTGTTTTCTTCCTTAGAACCATGAAAGAGCCCAGCTTCGAAGGGTTCTACCAAAGCAGGTTCGCTTCTAAACAGAAGCAGTTGATGAAGACCCAGAATTTTGACATTGTGAGGTATAATGAGCTGAAAGAAAGATTGTTGGTAAATCCAATCAAATTCAATCCAATTGTGGAGTGA 1008 49.11 MAFRKTLAQRLFNISKISNQALKTCRISSHSAARTQFPPDPNKSRIALDAGDDGIFRHFLHKRAEVPSSDLRPFQMGENWMEKLKSLGVGRDRIRLDGLSIPVQEKSEIVEDEGLTVEETRKLLKMVRLEAVKSRLRGIQKSWIPYSEFVQICGEGSADLDRELGLAKMLDESGTVIVLGNIVLLRPEQVAKAIQGLIPIPGTTQNATAEKELEAMEKHKAVIDKKAEALVRRELYFGLSFFLAQTAAFMRLTFWELTWDVMEPICYYVASTYFMGACVFFLRTMKEPSFEGFYQSRFASKQKQLMKTQNFDIVRYNELKERLLVNPIKFNPIVE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10845260 10847690 + Conep06aG0140300.1 Cone6ag1347 440231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1347 335 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 75 322 IPR039055 GO:0005262(PANTHER)|GO:0015292(PANTHER)|GO:0031305(PANTHER)|GO:0036444(PANTHER)|GO:0051560(PANTHER)|GO:0051560(InterPro)|GO:1990246(PANTHER)
Cone6ag1347 335 Coils Coil 206 226 - -
Cone6ag1347 335 Pfam Mitochondrial calcium uniporter 162 319 IPR006769 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1347 K20858 - - csv:105434446 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1347 Cone-Chr6:10845260 Cone7ag1802 Cone-Chr7:11792793 1.18E-73 dispersed
Cone12ag0081 Cone-Chr12:432291 Cone6ag1347 Cone-Chr6:10845260 1.76E-40 wgd
Cone17ag1321 Cone-Chr17:9345941 Cone6ag1347 Cone-Chr6:10845260 6.10E-77 wgd
Cone6ag1347 Cone-Chr6:10845260 Cone9ag1290 Cone-Chr9:9680647 4.74E-220 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g912 . . Bda04g00320 Bda10g00321 . . Bma09g00354 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1347 . Lsi01g01053 . . . . . . . . Bpe06g00247 Bma03g01058 . Sed01g0082 . . . . . . . . Bhi10g02232 Tan07g1029 Cmetu11g0018 . Hepe10g0829 . . . . . . . . . . . Chy02g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005008 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40