Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1352 ATGGGTTCAACCTTCTTCTTCAATCCCATCTCCATCTTCATCCTCACTACCTTCTCTTACTATTCCTCGGCCCAACAGCCTTATGTCGGGAAAGCCACAACCGATTGTAACAACCAATATAACTCAAGTTCCGGTCTAGGCTACTTTTGTAATAACGGCCTGAACCGGACCTGCCAAGCCTATCTCACCTTCAGATCTCTCTCTCCTTATGACTCCGTTTCGACCATTTCTGCCCTCTTAGGATCCGATCCAAGTCAGCTCTCTCAACTAAACTCGGTTTCAGAATCGTCAACCTTCGAAACAAACAAACTGGTCCTTGTTCCAATCAACTGTTCTTGCTCAGGTGAGTTCTATCAAGCAAACACAACTTACTCCATTCCGTCCGGAGGTGGCTATTTTATAACCGCTAATAATACGTTCCAAGGATTATCGACATGCCAAGCAATTCAATATCAGAACAGTAATCTTACGGCAAATGACTTACAGCCTGGTACTAGGATTGTTGTCCCACTTAGATGTGCTTGTCCTTCAAAGAATCAAATCGATTCCGGTTTCAACTACTTATTGAGTTATCTTATTAAAGAGAATGATTCTGTTCGAACTATTAGTGAAAGATTCGGTTCGGATTTCCAGAGTACTCTTCAAGCTAATGAGCTTACGGAATCTTCCACTATAAATTTCTTTACCACCCTTTTAGTACCTCTTAAAAGCCCTCCGACAAGTAACCAAACCGTAGAGTCCCCACCACCCCCGCCTCCTCCACCTTCAACACCGAGCCCCACCTCTAACGAGAAGTCAAAGAAAAAAACATGGGTTTATATCCTTATCGGGGTTCTTGTTGGAGGAGGTGTAGTACTAATTATAGGCATATTTATCTTCTACAAACTTTCCAAGAAAAAAGGAAGGGCGAATACCGATTCGACTTATGTTGTTTCGGAAAATTTTCCGTCATTTGAGAAGCCGTTAAATAATAATGTGGACGACGAGTCCTGTGAGAGTGTGATAGAAAGCTTATCGAGCATGACACAGAGTATCTCAGTTTACAGTTTCAAAGAGCTCCAACTTGCTACAGATAATTTCGCTCCGAGCTCTTTGATCAAGGGATCAGTTTATCGAGGCACAATTAAAGGCGACTTTGCAGCAATCAAGAAGATGAACGGAGAGGTGTCTAAGGAGATCGCCTTACTGAACAAGATCAACCATTCGAATCTCATACGATTATCTGGAGTATGTTTCAACGAGGGACATTGGTTTTTAGTTTACGAATATGCAGCTAACGGTCCGTTAAGTGATTGGATCTATGACAACAATAGTTCCGACAAAAAAATTTTGAGTTGGACTCAAAGGATTCAAATCGGATTAGATGTGGCAACTGGGCTTAATTATCTACATAGCTTTAGTATTCCACCCCATGTGCATAAAGACATCAAGAGTAGTAATGTTCTCCTCGATAGTGATTTCCGTGCGAAGATAGCGAGTTTCGGTCTAGCCAGATCGGCAGAAAGTCAAGAGGGCGAGTTTCAATTGACTAGGCATATTGTTGGAACAAGAGGATATATGGCTCCAGAATATGTGGAACATGGTTTGGTGTCAACAAAGCTTGATGTGTATTCCTTTGGGGTTCTTTTGACGGAAATGATTACAGGGAAAGAAGTTTCGGAATTGTATGGGAATTCAGAATTGCGGGTGTTTGAGGTTTTGAATGGTGTGGTAATTGATGAGAAAGATGATGCAGTATTGGAGAGTTTGAGGCAAATTATGGACCCTAGTTTGATAGGGACTTATCCAGGAGGGCTTGTGGTCTTTATAGCGAATTTGATTCGTTCTTGTTTGAGGAAAGACCCGTCGGAAAGACCGTCCATGGAGGAGATCATACAGTCCCTTTCGAGAACCCTGAGCAGTTCGCTTGCATGGGAATCATCAAAAACAGAGTTTCCGGGTAATAACTGA 1950 42.21 MGSTFFFNPISIFILTTFSYYSSAQQPYVGKATTDCNNQYNSSSGLGYFCNNGLNRTCQAYLTFRSLSPYDSVSTISALLGSDPSQLSQLNSVSESSTFETNKLVLVPINCSCSGEFYQANTTYSIPSGGGYFITANNTFQGLSTCQAIQYQNSNLTANDLQPGTRIVVPLRCACPSKNQIDSGFNYLLSYLIKENDSVRTISERFGSDFQSTLQANELTESSTINFFTTLLVPLKSPPTSNQTVESPPPPPPPPSTPSPTSNEKSKKKTWVYILIGVLVGGGVVLIIGIFIFYKLSKKKGRANTDSTYVVSENFPSFEKPLNNNVDDESCESVIESLSSMTQSISVYSFKELQLATDNFAPSSLIKGSVYRGTIKGDFAAIKKMNGEVSKEIALLNKINHSNLIRLSGVCFNEGHWFLVYEYAANGPLSDWIYDNNSSDKKILSWTQRIQIGLDVATGLNYLHSFSIPPHVHKDIKSSNVLLDSDFRAKIASFGLARSAESQEGEFQLTRHIVGTRGYMAPEYVEHGLVSTKLDVYSFGVLLTEMITGKEVSELYGNSELRVFEVLNGVVIDEKDDAVLESLRQIMDPSLIGTYPGGLVVFIANLIRSCLRKDPSERPSMEEIIQSLSRTLSSSLAWESSKTEFPGNN 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10877275 10879708 + Conep06aG0140800.1 Cone6ag1352 440236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1352 649 SMART serkin_6 360 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1352 649 SUPERFAMILY Protein kinase-like (PK-like) 335 628 IPR011009 -
Cone6ag1352 649 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 642 IPR052611 -
Cone6ag1352 649 MobiDBLite consensus disorder prediction 238 264 - -
Cone6ag1352 649 MobiDBLite consensus disorder prediction 243 260 - -
Cone6ag1352 649 Pfam LysM domain 191 234 IPR018392 -
Cone6ag1352 649 FunFam PTI1-like tyrosine-protein kinase 3 424 642 - -
Cone6ag1352 649 ProSiteProfiles Protein kinase domain profile. 294 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1352 649 Gene3D Transferase(Phosphotransferase) domain 1 425 644 - -
Cone6ag1352 649 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
Cone6ag1352 649 Pfam Protein kinase domain 380 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1352 649 Gene3D Phosphorylase Kinase; domain 1 332 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1352 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0984 Cone-Chr16:9727813 Cone6ag1352 Cone-Chr6:10877275 1.10E-65 dispersed
Cone20ag1276 Cone-Chr20:8330605 Cone6ag1352 Cone-Chr6:10877275 8.33E-74 dispersed
Cone5ag1569 Cone-Chr5:10950545 Cone6ag1352 Cone-Chr6:10877275 6.09E-139 dispersed
Cone6ag1352 Cone-Chr6:10877275 Cone7ag0290 Cone-Chr7:1247880 1.30E-97 dispersed
Cone6ag1352 Cone-Chr6:10877275 Cone6ag1353 Cone-Chr6:10880205 1.55E-76 tandem
Cone17ag1317 Cone-Chr17:9332103 Cone6ag1352 Cone-Chr6:10877275 1.30E-118 wgd
Cone4ag1426 Cone-Chr4:11369690 Cone6ag1352 Cone-Chr6:10877275 8.60E-45 wgd
Cone6ag1352 Cone-Chr6:10877275 Cone8ag0086 Cone-Chr8:449382 1.86E-64 wgd
Cone6ag1352 Cone-Chr6:10877275 Cone9ag1287 Cone-Chr9:9646456 1.03E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82963 None None None None Cone PK