Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1353 ATGACTGCCTCTTTCCTTTTCTCACAGGCTTATTTTCTTCTTCTGTTCTTTTCTAATCACATCATAACATCTCAATCACAACCCACCACTAACATAAACTTCTCATGCTCTACAGATTCAACTCCCTCTTGCAAAGCCTATGTGTCCTACTTTGTGGAAGGACCCGAATTCATGAATCTTCAAAACATTTCCGAGCTATTCGGCTTTAGTACTCAATCGATAGCAAATGCTAGCAACTTAGCCTCGGAGAATTCTCCATTATACCCTCACCAACTCTTGCTCATACCGGTCACTTGTGGCTGTACTTCAAACCAATTTTTCGCAAACATCACTCATAGAATAAAGAAAGACGAGAATTACTATATGGTTTCGACTCATCATTTCGAGAATCTCACCAACTGGCCCCTCGTGAAAGTAACAAACCCGTCTCTAAATCCGAACCGGTTACAAATTGGCCAAGAAGTAGTCTTCCCTTTGTTCTGTAAGTGCCCTTCGGATAAGAATTTGGAAAACAGAATAAATTCCTTAATCACTTACATATGGCAACCCAATGATGATATCTTGCTCGTGAGTGGAAGGTTTAATGTGTCAACTCGCGATATCTTAACCGAAAATAATTACCATGACATGACCGATGCTGTGGGGCTTCCAGTTGCTATCCCGGTCTCAGAGTTACCACTTCTGACTCAGTCTTACCCTTCGCTAGAAGGGAAGAAGTCCAATCATAGATGGCTCATTATTGTCTTAATAAGCTTAGGAGGAGGTGGGTTTTTAGTCTTGGTTTTAGCGGGTGTTTTGGTTTATACTTATTGTTCGTATAAGAAGAAGTCGTTGAAATGGGATTTTTGTTCTTCCTTGGAGGAGACTTATGATTTAGCTCTTGTTAAGAAACCTCGAAAAGGCAGTAAATTTGAGACAAAGATCATCCATGATAAGCTCCTTCTTGGGGTTTCAGACTATCTTTGTAAGCCTATCATATATGAGCATAAAGTGATTATGGAGGTGACCATGAATCTCAACGAAAGTTGTCGGATTGGAGGGTCGATTTATCGGGTCATGGTCAATGGAAATATCTTAGCTATAAAGAAAACGAACCAAGATGTAACAGAAGAGTTAAAGATCTTACAGAAAGTAAATCATGTGAATCTAGTGAAGTTGATGGGAATCTCGTCGGATATAGATGGGAATAGCTTCTTGGTCTATGAATATGCCGAAAATGGGTCCCTCGATGAGTGGTTAATATCTGAGAAGTATTCTTCACCTTCTTCAGCCTCATCGAGCTCCAATGGAATTCTGACATGGTGGCAGAGGCTACATATAGCCCTCGATATAGCCAACGGCCTTCAATACTTGCACGAACACACCCAACCAAGTATTGTCCATAGAGATATTCGGACAAGTAATATACTCCTTGATTCAAATTTCAAGGGGAAGATAGCAAAACTATCCATGGCTAGACCGGCTACTAACTCTCTCTCACCCAAAGTGGATGTCTTTGCTTTTGGAATTGTTGTTTTGGAGTTGCTTTCAGGAAAGGAAGCCATGGAAACAAAAGGGAATGGTGAGGTGGTGATGATATGGAAGGAAATAAAGGAAGTGTTAGATGTTGAAGAGAAGAGAAAGGAAGCAATGAGGAATTGGATGGATCCGAAACTTGGGCAGGTTTATCCGACTAATGGGGCTTTAAGCTTGGCTGCTTTAGCTAGAGCTTGCACATTGGATAACCCTTCTGCTAGGCCAAGTATTGGAGAAATTGTGTTTAATCTCTCTGTTCATTGTCAATCTTCTTTTGATATGCTGGAAAAATATTGGGTTTCGGGATTAGATGATGATGCAGGTGGTCATAATATATGTCCGGTTATTGCTCGCTGA 1872 40.71 MTASFLFSQAYFLLLFFSNHIITSQSQPTTNINFSCSTDSTPSCKAYVSYFVEGPEFMNLQNISELFGFSTQSIANASNLASENSPLYPHQLLLIPVTCGCTSNQFFANITHRIKKDENYYMVSTHHFENLTNWPLVKVTNPSLNPNRLQIGQEVVFPLFCKCPSDKNLENRINSLITYIWQPNDDILLVSGRFNVSTRDILTENNYHDMTDAVGLPVAIPVSELPLLTQSYPSLEGKKSNHRWLIIVLISLGGGGFLVLVLAGVLVYTYCSYKKKSLKWDFCSSLEETYDLALVKKPRKGSKFETKIIHDKLLLGVSDYLCKPIIYEHKVIMEVTMNLNESCRIGGSIYRVMVNGNILAIKKTNQDVTEELKILQKVNHVNLVKLMGISSDIDGNSFLVYEYAENGSLDEWLISEKYSSPSSASSSSNGILTWWQRLHIALDIANGLQYLHEHTQPSIVHRDIRTSNILLDSNFKGKIAKLSMARPATNSLSPKVDVFAFGIVVLELLSGKEAMETKGNGEVVMIWKEIKEVLDVEEKRKEAMRNWMDPKLGQVYPTNGALSLAALARACTLDNPSARPSIGEIVFNLSVHCQSSFDMLEKYWVSGLDDDAGGHNICPVIAR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10880205 10882076 - Conep06aG0140900.1 Cone6ag1353 440237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1353 623 Pfam LysM domain 60 96 IPR018392 -
Cone6ag1353 623 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 18 597 IPR052611 -
Cone6ag1353 623 ProSitePatterns Tyrosine protein kinases specific active-site signature. 459 471 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1353 623 ProSiteProfiles Protein kinase domain profile. 246 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1353 623 Pfam Protein tyrosine and serine/threonine kinase 362 488 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1353 623 Gene3D Transferase(Phosphotransferase) domain 1 345 490 - -
Cone6ag1353 623 SMART tyrkin_6 339 589 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cone6ag1353 623 Gene3D Transferase(Phosphotransferase) domain 1 491 602 - -
Cone6ag1353 623 SUPERFAMILY Protein kinase-like (PK-like) 347 589 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1353 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1353 Cone-Chr6:10880205 Cone9ag1287 Cone-Chr9:9646456 0 dispersed
Cone6ag1352 Cone-Chr6:10877275 Cone6ag1353 Cone-Chr6:10880205 1.55E-76 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g904 . . . . . . . . . . . Cma07g00748 . Car07g00735 . . . . . . . . . . . . . . . . . . . Cone6ag1353 . Lsi01g01045 . . . . . . Bda14g01210 . . . . . . Cmo07g00769 . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82964 None None None None Cone PK