Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1365 ATGTTTCTTTACCTTCGTATTCGGTCTCTTATTGCGGCGATTTTCATAGCCTCATCTTCAACCGTCGCTCAAACCCTAGACTCAACGAGTTGCAGAACGGGCGAGTTAGGCGAACTCATAACTTATCCCTTCGGTTTCTCGAACTCGACTCCAATCCGATTGAATTGCGAGAACGGCGAGATCAGAATCGGAGAGTTACGTGTCCAGAACATCACCGAGCGGAGCATTCTCATTGATCTACCTCCAGAATGCATCCGTTCGACTCGATCGATTTTACCTCTCTTCGGCGCGAACTACTGGCCGATTCGAAATAACAGCTTTCTACTCAAGAACTGTACGCCTCCGATCGCCAACTGCATTCAGTCGACTAGCTTCGTGTCGGACCGATTATCGCTGCAAAATTGTGGTCCTAGGAATCAGAGTTGCTTCTCTCCGATTCCGACCGTCGGAGATTATATAGACTACGAGCAACTGAATTTGACTCGCTGCGGGTACCTGATCTCTTCGATCGTCCTTTACTCGGAGTTGAGTTCCACCGTCTCGCTCGCGTTTCAGGCCATCGAGTTAGCCTGGTGGCTCAATGGTCCGATCAAATGCGGCGGGAATGCTTATCCCGAGATTATTACTCTCCATAACAAGAAGTTTGGGTTCCGATGCCACTGCAAAAAAGGCTTTGAAGGAGATGCATACGCCGACGGAAACGGTTGCCGGAAAGCACCAGCTTGCAATGCTTCAAAGTACATGTCTGGGCGATGTGGAGGAACAACTAGAGTTGGTGTTCTTATTGGAGGTATCGTCGCTGGAGCTGTTTTAGTGGCCGGTCTAGCAATAATCTGCTATTTTGTAAGATGCCGTTCATCTTGTTTAAGAAGCCAGTTAAGTGCAAAGCGTCTTCTAAGTGAAGCAGCAGGAAATTCAAGTGTCCCATTATACCCCTATAGAGACATCGAACGAGCCACAAACAGCTTCTGTGAAAAACAACGCCTCGGAACAGGAGCCTTTGGAACGGTCTATGCCGGAAAACTCAACAGCGATGAATGGGTAGCCATTAAAAAAATCAAATATAGAGACCATAACAGCATTGACCAGGTCATGAATGAAATCAAGCTCCTTTCTTCGGTCAGCCATCCAAACCTAGTCCGGCTTCTGGGTTGTTGCATTGACCAAGGTCAACAGATCCTTGTCTATGAGTTCATGCCTAATGGAACTCTTTGTCAACATTTACAAAGAGAGAGAGGCAAAGGTCTTCCATGGACAATCCGGCTCACTGTAGCTACTGAGACGGCTCATGCTATAGCTTATCTTCATTCCTCCATCCACCCACCTATATACCATAGAGACATTAAATCAAGCAATATACTTCTTGACTACCATTACAAGTCAAAGGTTGCTGATTTCGGTCTTTCTAGACTCGGCTTAATTGAAACATCGCATATTTCCACGGCCCCACAGGGGACCCCAGGATATCTAGACCCACAGTATCATCAGAACTTCCATCTCTCAGATAAGAGTGATGTTTATAGTTTCGGAGTGGTTCTAGTGGAAATAATTACCGCATTAAAAGTGGTGGATTTTACCCGGCCTCAGAGTGAGGTGAATTTAGCCGCACTTGCAATTGATAGGATTGGAAGAAATTGTGTAGATGAAATAATTGACCCTTGTCTCGAACCATATAGAGATGCTTGGACCCTTTACTCGGTGCACAAAGTAGCCGAGCTTGCATTTAGGTGCCTTGCTTTTCACAGTGACATGAGACCTTCTATGATGGAAGTTGCAGAAGAGCTAGAGAATATAAGACTAAGTGGATGGGCTTCAATGGAGGAGAACATATGCATGGAATCGTCATCTTGTTTGTCATTGTGTAACGGAAGTGAGAGATCGATTAGTGGAAGGATGGTGGGAAAGGTGGTGGGGCTCGACGGCTGGGGATCGACTGTGGAGATCAAGAAGAAGGATGATCACGGTGATGGTGGTTTGGAAATGGTGGGAGAGATTGTAGATTGCTCACCTGTTTCTGTACAGGATCCTTGGTTAAGTGAACAGAGCTCCCCTTCAGCAAATAGTTTGTTGGGTAATGTAATTCACTGA 2088 46.07 MFLYLRIRSLIAAIFIASSSTVAQTLDSTSCRTGELGELITYPFGFSNSTPIRLNCENGEIRIGELRVQNITERSILIDLPPECIRSTRSILPLFGANYWPIRNNSFLLKNCTPPIANCIQSTSFVSDRLSLQNCGPRNQSCFSPIPTVGDYIDYEQLNLTRCGYLISSIVLYSELSSTVSLAFQAIELAWWLNGPIKCGGNAYPEIITLHNKKFGFRCHCKKGFEGDAYADGNGCRKAPACNASKYMSGRCGGTTRVGVLIGGIVAGAVLVAGLAIICYFVRCRSSCLRSQLSAKRLLSEAAGNSSVPLYPYRDIERATNSFCEKQRLGTGAFGTVYAGKLNSDEWVAIKKIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIDQGQQILVYEFMPNGTLCQHLQRERGKGLPWTIRLTVATETAHAIAYLHSSIHPPIYHRDIKSSNILLDYHYKSKVADFGLSRLGLIETSHISTAPQGTPGYLDPQYHQNFHLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRNCVDEIIDPCLEPYRDAWTLYSVHKVAELAFRCLAFHSDMRPSMMEVAEELENIRLSGWASMEENICMESSSCLSLCNGSERSISGRMVGKVVGLDGWGSTVEIKKKDDHGDGGLEMVGEIVDCSPVSVQDPWLSEQSSPSANSLLGNVIH 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10938260 10942107 - Conep06aG0142200.1 Cone6ag1365 440249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1365 695 FunFam Wall-associated receptor kinase-like 14 290 398 - -
Cone6ag1365 695 Pfam Protein kinase domain 325 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1365 695 SUPERFAMILY Protein kinase-like (PK-like) 303 596 IPR011009 -
Cone6ag1365 695 FunFam Wall-associated receptor kinase-like 20 399 608 - -
Cone6ag1365 695 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 29 682 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone6ag1365 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1365 695 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524(InterPro)
Cone6ag1365 695 Gene3D Transferase(Phosphotransferase) domain 1 399 614 - -
Cone6ag1365 695 ProSiteProfiles Protein kinase domain profile. 323 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1365 695 Gene3D Phosphorylase Kinase; domain 1 285 398 - -
Cone6ag1365 695 SMART serkin_6 323 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0161 Cone-Chr20:701412 Cone6ag1365 Cone-Chr6:10938260 7.87E-90 dispersed
Cone6ag1365 Cone-Chr6:10938260 Cone7ag1788 Cone-Chr7:11731708 2.60E-224 dispersed
Cone17ag1312 Cone-Chr17:9314587 Cone6ag1365 Cone-Chr6:10938260 1.97E-236 wgd
Cone6ag1365 Cone-Chr6:10938260 Cone9ag1279 Cone-Chr9:9578313 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82965 PF07992 Pyr_redox_2 2.30E-58 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1365 - - - 0.0