Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1371 ATGCCTTCAGAATCAACCGACCACCGCAAACAACCGAAAGAGAACAACCCTTGCGGCGGGGAGGCGACGGCGCCATCAGATCAGCAGCAAGAGAACCTCCCATGCCCACGCTGTGACTCGCCAAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCTCAGCCACGTCACTTCTGCAAATCCTGCCGCCGTTACTGGACCCGCGGTGGGACCCTCCGCGATATCCCCGTTGGCGGCGGGACCCGTAAGAGCGCCAAACGCTCACGCATTTCCCCCACAGCTTCCGGCACGTCCTCCACCGTTGTTTCTCATTTGAATCTCCCATTGCCCGCCAAGCCGATTCTGTTCCCGTTGAGGCCCAATGGTATGGGCCTGGGTGGCCCGTTTGGTGATGTGAAGCCCAATGCGAGCCTTTGTGGGAGTTTTACTTCGCTGCTTAATAATAATAGTCAGGGGCCAGGGTTATGGGCGCTTGGTGGGTTTGGGCTTGAAGAGGTGGGGTTTGAGCTTGGGAGAGGGGGTTGGGCTTTTCCTGTAGTGGGTGAGAGTGGTGGTGTTTGTGGCAATGGGGATGGGTTAGCGGTCGGTAATGGGTGGCAGGTAGAGGCCCAGGACGGTGGTTTGGGCGGCGGTGATTGCTTTTCGTGGCCCGATCTAGCTATTTCTACTCCCGGAAATGGGTTCAAATGA 693 56.71 MPSESTDHRKQPKENNPCGGEATAPSDQQQENLPCPRCDSPNTKFCYYNNYNFSQPRHFCKSCRRYWTRGGTLRDIPVGGGTRKSAKRSRISPTASGTSSTVVSHLNLPLPAKPILFPLRPNGMGLGGPFGDVKPNASLCGSFTSLLNNNSQGPGLWALGGFGLEEVGFELGRGGWAFPVVGESGGVCGNGDGLAVGNGWQVEAQDGGLGGGDCFSWPDLAISTPGNGFK 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11000787 11001479 + Conep06aG0142800.1 Cone6ag1371 440255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1371 230 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 96 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 MobiDBLite consensus disorder prediction 76 100 - -
Cone6ag1371 230 MobiDBLite consensus disorder prediction 1 15 - -
Cone6ag1371 230 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1371 Cone-Chr6:11000787 Cone7ag1206 Cone-Chr7:8973161 7.57E-31 dispersed
Cone6ag1371 Cone-Chr6:11000787 Cone6ag1373 Cone-Chr6:11021321 8.54E-28 proximal
Cone17ag1305 Cone-Chr17:9293229 Cone6ag1371 Cone-Chr6:11000787 8.14E-40 wgd
Cone6ag1371 Cone-Chr6:11000787 Cone9ag1302 Cone-Chr9:9775274 3.33E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46388 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1371 - - - 0.0