Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1371 ATGCCTTCAGAATCAACCGACCACCGCAAACAACCGAAAGAGAACAACCCTTGCGGCGGGGAGGCGACGGCGCCATCAGATCAGCAGCAAGAGAACCTCCCATGCCCACGCTGTGACTCGCCAAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCTCAGCCACGTCACTTCTGCAAATCCTGCCGCCGTTACTGGACCCGCGGTGGGACCCTCCGCGATATCCCCGTTGGCGGCGGGACCCGTAAGAGCGCCAAACGCTCACGCATTTCCCCCACAGCTTCCGGCACGTCCTCCACCGTTGTTTCTCATTTGAATCTCCCATTGCCCGCCAAGCCGATTCTGTTCCCGTTGAGGCCCAATGGTATGGGCCTGGGTGGCCCGTTTGGTGATGTGAAGCCCAATGCGAGCCTTTGTGGGAGTTTTACTTCGCTGCTTAATAATAATAGTCAGGGGCCAGGGTTATGGGCGCTTGGTGGGTTTGGGCTTGAAGAGGTGGGGTTTGAGCTTGGGAGAGGGGGTTGGGCTTTTCCTGTAGTGGGTGAGAGTGGTGGTGTTTGTGGCAATGGGGATGGGTTAGCGGTCGGTAATGGGTGGCAGGTAGAGGCCCAGGACGGTGGTTTGGGCGGCGGTGATTGCTTTTCGTGGCCCGATCTAGCTATTTCTACTCCCGGAAATGGGTTCAAATGA 693 56.71 MPSESTDHRKQPKENNPCGGEATAPSDQQQENLPCPRCDSPNTKFCYYNNYNFSQPRHFCKSCRRYWTRGGTLRDIPVGGGTRKSAKRSRISPTASGTSSTVVSHLNLPLPAKPILFPLRPNGMGLGGPFGDVKPNASLCGSFTSLLNNNSQGPGLWALGGFGLEEVGFELGRGGWAFPVVGESGGVCGNGDGLAVGNGWQVEAQDGGLGGGDCFSWPDLAISTPGNGFK 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11000787 11001479 + Conep06aG0142800.1 Cone6ag1371 440255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1371 230 Pfam Dof domain, zinc finger 31 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 96 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 MobiDBLite consensus disorder prediction 76 100 - -
Cone6ag1371 230 MobiDBLite consensus disorder prediction 1 15 - -
Cone6ag1371 230 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone6ag1371 230 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1371 Cone-Chr6:11000787 Cone7ag1206 Cone-Chr7:8973161 7.57E-31 dispersed
Cone6ag1371 Cone-Chr6:11000787 Cone6ag1373 Cone-Chr6:11021321 8.54E-28 proximal
Cone17ag1305 Cone-Chr17:9293229 Cone6ag1371 Cone-Chr6:11000787 8.14E-40 wgd
Cone6ag1371 Cone-Chr6:11000787 Cone9ag1302 Cone-Chr9:9775274 3.33E-153 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.3e-42 170.2
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT1G29160 56.5 1.7e-42 169.9
Cone6ag0960 . 1 151 C2C2-Dof Transcription Factor Family AT2G34140 53.9 6.3e-42 167.9
Cone9ag0968 . 1 150 C2C2-Dof Transcription Factor Family AT2G34140 55.7 2.4e-41 166.0
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 59.7 1.0e-40 164.9
Cone3ag0333 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 60.8 1.5e-39 161.0
Cone10ag0305 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 60.3 8.1e-38 155.2
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 56.7 9.0e-37 151.8
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 57.4 9.0e-37 151.8
Cone5ag0270 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 58.2 9.5e-41 165.2
Cone1ag1284 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 56.3 3.1e-39 160.2
Cone5ag1158 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 58.5 2.0e-38 157.5
Cone1ag0649 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 55.1 3.7e-37 153.3
Cone6ag1371 . 22 230 C2C2-Dof Transcription Factor Family AT3G50410 50.2 2.7e-49 193.0
Cone5ag0270 . 54 248 C2C2-Dof Transcription Factor Family AT3G55370 50.7 1.4e-41 167.9
Cone19ag0032 . 27 307 C2C2-Dof Transcription Factor Family AT5G60850 50.7 3.6e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006049 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 2 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46388 None None None None Cone TF