Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag1377 | ATGTCATCGTCAAATTCGCCATGTGCGGCGTGCAAGTTTCTTCGCCGCAAGTGCACGCCAGAGTGCGTGTTCGCACCCTACTTCCCACCTGACCAGCCTCAGAAATTCGCTAACGTCCACAAGGTGTTTGGAGCGAGTAACGTGGCTAAGCTTCTGAACGAGCTCGCTCAACCTCAACGAGAAGATGCAGTAAACTCTCTAGCCTATGAGGCTGAAGCTCGTCTTAGAGACCCAGTCTATGGCTGTGTAGGACTCATCTCGATCCTTCAACAAACACTCAAGCAGATGCAGAACGAGCTCTATAACGCTAGGCACGAACTCTCCGCTTATATCGGGCAACAAGCTATGATTCCGATATTGCCTTCTCAGTCACTCTCGGGTATGAATAATATTCCGTCTTGTTCTTCAGTTTTGCCCTATAGCATGTACAGTCCTACTCCCATGGGCGGCCTGGCACTGGGCCCTGGCCCAGGCTCACACAGTGGACAGTTGAGGTTTATTGATCAGGCTCAGCAGCAGCAGGAGCAGATTTTCGAGTCTCAACAATTTGGGGTTACTAGAGATCACCATAGGCAACAACAGGAGCAGCAGATATTTAGTGGATTTGAGCCGAAACATGAAGCGGGGGTGCACATGAGGAATCTGCAGCCGCAATTACAGGATCATCAGTTAATGAGGCTAAATGACGCGTTTAATAATCAAGCCAGTACTGGATCGGTTACTACTGCTGGTGGGTTTTTGAATCAGATAAACAGTTGTTCATCTGGGTTAGTAGCGTCGCCTTCGGCCTTGGTATTGGGTGGTTATGTCGATGATAATAACAACCGTTATCAAATACAAGTAGAGCAGAGGGATCCAAACCCTCACATTCATCATCATCTTCAGCTACGGACACAGCTTTTGGTGGGAGGACATGATCGTCAAGGACAAGGAGAACCGGCGTTGCAGACTGAGCAATTGCTGCAGCAACGGCGGCGACAAGAGAAGACGGAAGAGGAGGAGGAGGACAGGACAGTGGGTCTCTCTTCTTGA | 1032 | 49.52 | MSSSNSPCAACKFLRRKCTPECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELAQPQREDAVNSLAYEAEARLRDPVYGCVGLISILQQTLKQMQNELYNARHELSAYIGQQAMIPILPSQSLSGMNNIPSCSSVLPYSMYSPTPMGGLALGPGPGSHSGQLRFIDQAQQQQEQIFESQQFGVTRDHHRQQQEQQIFSGFEPKHEAGVHMRNLQPQLQDHQLMRLNDAFNNQASTGSVTTAGGFLNQINSCSSGLVASPSALVLGGYVDDNNNRYQIQVEQRDPNPHIHHHLQLRTQLLVGGHDRQGQGEPALQTEQLLQQRRRQEKTEEEEEDRTVGLSS | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11057520 | 11058551 | - | Conep06aG0143400.1 | Cone6ag1377 | 440261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag1377 | 343 | Coils | Coil | 86 | 106 | - | - | |
| Cone6ag1377 | 343 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 191 | - | - | |
| Cone6ag1377 | 343 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Cone6ag1377 | 343 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - | |
| Cone6ag1377 | 343 | MobiDBLite | consensus disorder prediction | 305 | 343 | - | - | |
| Cone6ag1377 | 343 | Coils | Coil | 317 | 337 | - | - | |
| Cone6ag1377 | 343 | MobiDBLite | consensus disorder prediction | 322 | 343 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1202 | Cone-Chr11:9095715 | Cone6ag1377 | Cone-Chr6:11057520 | 5.31E-40 | dispersed | |
| Cone1ag0847 | Cone-Chr1:54241388 | Cone6ag1377 | Cone-Chr6:11057520 | 2.37E-56 | dispersed | |
| Cone5ag0965 | Cone-Chr5:4129039 | Cone6ag1377 | Cone-Chr6:11057520 | 2.37E-56 | dispersed | |
| Cone6ag1133 | Cone-Chr6:8260428 | Cone6ag1377 | Cone-Chr6:11057520 | 7.18E-56 | dispersed | |
| Cone6ag1377 | Cone-Chr6:11057520 | Cone9ag1121 | Cone-Chr9:7475993 | 2.30E-51 | dispersed | |
| Cone6ag1377 | Cone-Chr6:11057520 | Cone9ag1307 | Cone-Chr9:9810044 | 4.45E-204 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46391 | PF04144 | SCAMP | 8.30E-47 | No_clan | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag1377 | - | - | - | 0.0 |