Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1378 ATGATCATTTTGCCTACAATGCGTTGGTTCTCTAGCATTTCCTTTACTTCCACACACACGCCGGCGACGTCTTCTTCCCCGTCGTCGAAGGCGGCGGATACACCCTCCACCGGCATAGGTCGCGAGAGTCCGAGGCGGAGGAGCAAGAGCAGCGGAGGCGCATGCGATGACCGTCATTACCGACGAGGTATTTGGCCTTTTGGTGCTTCTAAGCCATGGCGACAGAAGAGGCACGATGTCCTCAGCGACGGTGAATTCACCACTGGTGGTGCTTCTTCTTCCAAATGGACGGGTATAGCCGCCGAGCCTGTGGCTCTTTCCCGTTGTCCGAGCAATTTCGAATACGCTTTGCCGCTTCCACTTCCGGAATCTCCCTGCGATATCTCTCCGCGTAAATCAGAGGTTTTCGTGAATTTGAATTTTTCCGGCGACGGTGATTGCCCTCTCCCATCGCCCAAGGACGTGCCTACGAAAACTGTGGAGCAGCGCGATAGGGATATTGATTTGACCAGAGCTACTCATAAGATTGGGGATGGAGATTTATCTCACACTCCTACCAAAAGTCCGTATTCATATCAAGAAAGACCTGTAAAAAAGGATCATGGTGAATCAAAGGCCTCTAGGAATCGGAATCAGTCCTCGGGAAGATCTCCAAAGAATTTCCGGGTTAAAGTACCTGTTTGGAGTGCTTTCCCTACCACTTTAATAAGTCCTAATACCAGCCCTCCAAGAATGAGGGCTAGCGATTCACTGTCATTCTATTACTCGGCTCCTAATAAAGGCTTTCAAACCTGGTCTGCGCCTGAAAATCCATCATCACCAGTAAATCCAGGGGTATCTCCCCCTAGATTCTATCATCGCTCTTCAATTAGCACTGATAATTCTCCTTTACAAAGCCCACAAGGGAGAAGTCCACATGGATTTATTGTCCATCCATTACCTCTTCCTCCTGGAGGGTCATTGCCTTCACCATCAGCTCATACAAGCCAAGTTACAGCTAAGCTGGAGGCTTTGCAAATAAAAAATAACTGGCAGAAAGGAAAGCTTATTGGACGTGGCACATTTGGAAGCGTAGAAACAGGGGCTCTATGTGCAATGAAGGAAGTTGAATTATTTCCTGATGACCCAAAATCTGCGGAGAGTATAAAGCAGTTAGAACAGGAAATTAAAATTCTTAGCCAGCTGAAGCATCCAAATATTGTCCAGTATTATGGTAGTGAAACAGTTGATGATAAATTTTACATATACCTTGAGTATATTCATCCTGGTTCGATAAATAAATATGTTCGTGAACATTGTGGAGCAATAACAGAATCAGTTGTTCGAAATTTTACTCGCCATATTCTCTCCGGGTTGGCTTACTTGCATAGCACAAAGACCATACATCGGGATATCAAAGGAGCTAATCTGCTTGTTGACTCGTGTGGGGTTGTCAAGCTAGCCGACTTTGGGATGTCTAAACATCTTACCGGAGTAGCAGCTGAGCTCTCTCTGAAGGGAAGTCCATACTGGATGGCCCCTGAGCTCATGCAAGCTATAATGCAGAAAGATAACCACCCCGACCTTGCTTTAGCCATAGACATATGGAGTCTTGGCTGTACAATTATCGAAATGCTCACCGGAAAGCCTCCTTGGAGTGAGTTTGAAGGGACTCTTATACCATTTTCAGGTAGCAGCCATGTTTAA 1686 46.32 MIILPTMRWFSSISFTSTHTPATSSSPSSKAADTPSTGIGRESPRRRSKSSGGACDDRHYRRGIWPFGASKPWRQKRHDVLSDGEFTTGGASSSKWTGIAAEPVALSRCPSNFEYALPLPLPESPCDISPRKSEVFVNLNFSGDGDCPLPSPKDVPTKTVEQRDRDIDLTRATHKIGDGDLSHTPTKSPYSYQERPVKKDHGESKASRNRNQSSGRSPKNFRVKVPVWSAFPTTLISPNTSPPRMRASDSLSFYYSAPNKGFQTWSAPENPSSPVNPGVSPPRFYHRSSISTDNSPLQSPQGRSPHGFIVHPLPLPPGGSLPSPSAHTSQVTAKLEALQIKNNWQKGKLIGRGTFGSVETGALCAMKEVELFPDDPKSAESIKQLEQEIKILSQLKHPNIVQYYGSETVDDKFYIYLEYIHPGSINKYVREHCGAITESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMSKHLTGVAAELSLKGSPYWMAPELMQAIMQKDNHPDLALAIDIWSLGCTIIEMLTGKPPWSEFEGTLIPFSGSSHV 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11065392 11069459 + Conep06aG0143500.1 Cone6ag1378 440262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1378 561 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 149 550 IPR050538 -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 157 181 - -
Cone6ag1378 561 ProSiteProfiles Protein kinase domain profile. 344 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1378 561 Pfam Protein kinase domain 345 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1378 561 SMART serkin_6 344 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1378 561 MobiDBLite consensus disorder prediction 40 57 - -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 193 207 - -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 285 302 - -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 19 57 - -
Cone6ag1378 561 SUPERFAMILY Protein kinase-like (PK-like) 326 548 IPR011009 -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 19 36 - -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 146 221 - -
Cone6ag1378 561 Gene3D Transferase(Phosphotransferase) domain 1 340 555 - -
Cone6ag1378 561 MobiDBLite consensus disorder prediction 265 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1378 Cone-Chr6:11065392 Cone8ag0019 Cone-Chr8:140232 1.23E-80 dispersed
Cone12ag0109 Cone-Chr12:567623 Cone6ag1378 Cone-Chr6:11065392 3.30E-33 wgd
Cone4ag1555 Cone-Chr4:11959759 Cone6ag1378 Cone-Chr6:11065392 1.58E-113 wgd
Cone6ag1378 Cone-Chr6:11065392 Cone7ag1397 Cone-Chr7:10015837 3.50E-122 wgd
Cone6ag1378 Cone-Chr6:11065392 Cone8ag0112 Cone-Chr8:570627 1.81E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82966 PF05212 DUF707 2.00E-134 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1378 - - - 0.0