Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1392 ATGCAGAAAATCGGAATCGGAGAGGATCAGGAACACTACATAATGGTCTCAGCTCTGAAACACGTCATCAATGGCGGGTGCTCTAATTCGTCAGACGGTGATGCCACATGTCACCAGCCGTGGACAATTGGGACCAGCTACATCTGGTTTCCCGATGCAGAGATGTGTGGGGTCTGCAGAATCAAGGGCTGCTTGGGTTGCAATTACTTTATTGGAGAAGAGGATGGAGAATTAGAAGATGGTGAGAAGCAGAGGAACAAGAATAATATGAAGAAGAAGATGAAAGTGAAGGTGAAGAAGAATTACAGAGGGGTGAGGCAGAGGCCATGGGGTAAATGGGCGGCCGAGATCCGAGACCCAAGACGGGCGATCCGGGTCTGGCTCGGGACGTTCGAGACGGCAGAGCAAGCGGCCCGGGCTTATGATCGGGCTGCCATTGAGTTCAGAGGAAACAGAGCAACGCTCAACTTTTCGCCGACGGACTACGTGGAGAAGCGAAGCCCAGACCAGTCCGGAATGGGCTGGGAAAAAGACGGTATGAAGAAGGATGGAGTGTGTGGATAA 564 51.95 MQKIGIGEDQEHYIMVSALKHVINGGCSNSSDGDATCHQPWTIGTSYIWFPDAEMCGVCRIKGCLGCNYFIGEEDGELEDGEKQRNKNNMKKKMKVKVKKNYRGVRQRPWGKWAAEIRDPRRAIRVWLGTFETAEQAARAYDRAAIEFRGNRATLNFSPTDYVEKRSPDQSGMGWEKDGMKKDGVCG 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11213338 11213901 - Conep06aG0145100.1 Cone6ag1392 440276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1392 187 PANTHER DNA-BINDING DOMAIN 86 164 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone6ag1392 187 SUPERFAMILY DNA-binding domain 101 158 IPR016177 GO:0003677(InterPro)
Cone6ag1392 187 SMART rav1_2 101 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1392 187 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1392 187 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1392 187 MobiDBLite consensus disorder prediction 170 187 - -
Cone6ag1392 187 CDD AP2 102 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1392 187 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1392 187 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Cone6ag1392 187 Gene3D AP2/ERF domain 100 159 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1392 187 MobiDBLite consensus disorder prediction 161 187 - -
Cone6ag1392 187 Pfam AP2 domain 101 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0832 Cone-Chr6:4261743 Cone6ag1392 Cone-Chr6:11213338 1.85E-21 dispersed
Cone6ag1390 Cone-Chr6:11199855 Cone6ag1392 Cone-Chr6:11213338 1.67E-94 dispersed
Cone6ag1392 Cone-Chr6:11213338 Cone9ag1320 Cone-Chr9:9921631 5.09E-102 dispersed
Cone8ag0138 Cone-Chr8:727322 Cone6ag1392 Cone-Chr6:11213338 2.49E-10 dispersed
Cone9ag1333 Cone-Chr9:10006464 Cone6ag1392 Cone-Chr6:11213338 7.18E-10 dispersed
Cone6ag1391 Cone-Chr6:11208418 Cone6ag1392 Cone-Chr6:11213338 5.30E-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46394 PF13921 Myb_DNA-bind_6 2.80E-13 CL0123 Cone TF