Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag1401 | ATGGAGTGGGTTCGATTGAACCAGATCGGTCAAGGAAGCTACGCAACAATAAGTTTGGCAGCTACCAGAAAAGGTACTAGTCCTGCTCTGTTTCCTCCATTGATGGCGGTCAAAACCTCAGAGGCAATACACTGTGCTTCGCTTAGGCACGAGAAACAAGTTCTAGACCACCTCGGCCATTTTTGCCCACAAATCATACGTTGCTATGGAGACAGTCACACTACAGAAAACAGAGAAGAGTTTTATAATATCTTTTTAGAATACGCTAGTGGAGGAAGTTTAGCCAGTAAAATTGGCGGGAAGTTGCCAGAATTTGAAGTCAGGAAATACACGAGAGCGATACTTAAAGGGCTTGGTTATATTCATTCTAAGGGAGTTGTTCATTGCGATATAAAGCGGCAGAATATTCTACTGCTTGAGAATGGCGATTTGAAGATTGCTGATTTCGGATTAGCGGTGAAGAAAACAGGGGAAGGAGAAAACAGGGGAGGAGGAGAAACAGAGGGGAGAAGGGTCGAGATCAGGGGGACGCCGCTGTATATGGCGCCGGAAGCGGTGAATGGTAATGAGTACGTCTTTCCATCTGATGTGTGGGCCCTAGGGTGCGTCGTGGTGGAGATGGTGACGGGGAAACCAGCGTGGGATCGACAAGCGGGATCGAATATGTATGCTTTGATGATTCGGATTGGGGTCGGAGGTGAATTACCGAATATACCCTCAGAGTTGTCGGAGGAAGGGAGGGACTTTCTGGGGAAGTGCTTTGTGAAAGATCCTAAAATGAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTGTGCGAGTTTGTGGTGATGATGATGACGATGACAATAATTGTACGGTTAAAATGGATCGGGCTGGTGATGAGTTGCCTAAGTCGCCTAAGTCGCCCAGATGTCCGTTTGATTTTGGGGTATGGGATTCAATGCATTCTAATTCTTCCATATTGCCGGAATCCTGGTCAGAAATTAGGCCAGCGGGATTTTCAGCTAGTGACCGGTTACGTGAGCTTGTGACCAGGGAGGTTGTTGATTGGTCTGTTTCTGACAGCTGGGTCACTTTAAGATGA | 1089 | 46.83 | MEWVRLNQIGQGSYATISLAATRKGTSPALFPPLMAVKTSEAIHCASLRHEKQVLDHLGHFCPQIIRCYGDSHTTENREEFYNIFLEYASGGSLASKIGGKLPEFEVRKYTRAILKGLGYIHSKGVVHCDIKRQNILLLENGDLKIADFGLAVKKTGEGENRGGGETEGRRVEIRGTPLYMAPEAVNGNEYVFPSDVWALGCVVVEMVTGKPAWDRQAGSNMYALMIRIGVGGELPNIPSELSEEGRDFLGKCFVKDPKMRWTAEMLLNHPFVRVCGDDDDDDNNCTVKMDRAGDELPKSPKSPRCPFDFGVWDSMHSNSSILPESWSEIRPAGFSASDRLRELVTREVVDWSVSDSWVTLR | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11268172 | 11269431 | + | Conep06aG0146000.1 | Cone6ag1401 | 440285 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag1401 | 362 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 126 | 138 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone6ag1401 | 362 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 300 | - | - | |
Cone6ag1401 | 362 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 38 | IPR017441 | GO:0005524(InterPro) | |
Cone6ag1401 | 362 | SMART | serkin_6 | 3 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone6ag1401 | 362 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 274 | IPR011009 | - | |
Cone6ag1401 | 362 | ProSiteProfiles | Protein kinase domain profile. | 3 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone6ag1401 | 362 | CDD | STKc_MAPKKK | 2 | 273 | - | - | |
Cone6ag1401 | 362 | Pfam | Protein kinase domain | 5 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone6ag1401 | 362 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 274 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone15ag1175 | Cone-Chr15:9476846 | Cone6ag1401 | Cone-Chr6:11268172 | 1.99E-60 | dispersed | |
Cone6ag1401 | Cone-Chr6:11268172 | Cone7ag1039 | Cone-Chr7:7988622 | 2.64E-75 | dispersed | |
Cone12ag0124 | Cone-Chr12:665003 | Cone6ag1401 | Cone-Chr6:11268172 | 1.81E-119 | wgd | |
Cone6ag1401 | Cone-Chr6:11268172 | Cone8ag0131 | Cone-Chr8:677629 | 6.64E-115 | wgd | |
Cone6ag1401 | Cone-Chr6:11268172 | Cone9ag1329 | Cone-Chr9:9976718 | 1.59E-229 | wgd | |
Cone6ag1401 | Cone-Chr6:11268172 | Cone9ag1239 | Cone-Chr9:9076150 | 9.51E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82968 | PF00722 | Glyco_hydro_16 | 1.30E-37 | CL0004 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag1401 | - | - | - | 0.0 |