Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1401 ATGGAGTGGGTTCGATTGAACCAGATCGGTCAAGGAAGCTACGCAACAATAAGTTTGGCAGCTACCAGAAAAGGTACTAGTCCTGCTCTGTTTCCTCCATTGATGGCGGTCAAAACCTCAGAGGCAATACACTGTGCTTCGCTTAGGCACGAGAAACAAGTTCTAGACCACCTCGGCCATTTTTGCCCACAAATCATACGTTGCTATGGAGACAGTCACACTACAGAAAACAGAGAAGAGTTTTATAATATCTTTTTAGAATACGCTAGTGGAGGAAGTTTAGCCAGTAAAATTGGCGGGAAGTTGCCAGAATTTGAAGTCAGGAAATACACGAGAGCGATACTTAAAGGGCTTGGTTATATTCATTCTAAGGGAGTTGTTCATTGCGATATAAAGCGGCAGAATATTCTACTGCTTGAGAATGGCGATTTGAAGATTGCTGATTTCGGATTAGCGGTGAAGAAAACAGGGGAAGGAGAAAACAGGGGAGGAGGAGAAACAGAGGGGAGAAGGGTCGAGATCAGGGGGACGCCGCTGTATATGGCGCCGGAAGCGGTGAATGGTAATGAGTACGTCTTTCCATCTGATGTGTGGGCCCTAGGGTGCGTCGTGGTGGAGATGGTGACGGGGAAACCAGCGTGGGATCGACAAGCGGGATCGAATATGTATGCTTTGATGATTCGGATTGGGGTCGGAGGTGAATTACCGAATATACCCTCAGAGTTGTCGGAGGAAGGGAGGGACTTTCTGGGGAAGTGCTTTGTGAAAGATCCTAAAATGAGATGGACGGCTGAGATGCTTTTGAATCATCCTTTTGTGCGAGTTTGTGGTGATGATGATGACGATGACAATAATTGTACGGTTAAAATGGATCGGGCTGGTGATGAGTTGCCTAAGTCGCCTAAGTCGCCCAGATGTCCGTTTGATTTTGGGGTATGGGATTCAATGCATTCTAATTCTTCCATATTGCCGGAATCCTGGTCAGAAATTAGGCCAGCGGGATTTTCAGCTAGTGACCGGTTACGTGAGCTTGTGACCAGGGAGGTTGTTGATTGGTCTGTTTCTGACAGCTGGGTCACTTTAAGATGA 1089 46.83 MEWVRLNQIGQGSYATISLAATRKGTSPALFPPLMAVKTSEAIHCASLRHEKQVLDHLGHFCPQIIRCYGDSHTTENREEFYNIFLEYASGGSLASKIGGKLPEFEVRKYTRAILKGLGYIHSKGVVHCDIKRQNILLLENGDLKIADFGLAVKKTGEGENRGGGETEGRRVEIRGTPLYMAPEAVNGNEYVFPSDVWALGCVVVEMVTGKPAWDRQAGSNMYALMIRIGVGGELPNIPSELSEEGRDFLGKCFVKDPKMRWTAEMLLNHPFVRVCGDDDDDDNNCTVKMDRAGDELPKSPKSPRCPFDFGVWDSMHSNSSILPESWSEIRPAGFSASDRLRELVTREVVDWSVSDSWVTLR 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11268172 11269431 + Conep06aG0146000.1 Cone6ag1401 440285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1401 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1401 362 Gene3D Transferase(Phosphotransferase) domain 1 2 300 - -
Cone6ag1401 362 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524(InterPro)
Cone6ag1401 362 SMART serkin_6 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1401 362 SUPERFAMILY Protein kinase-like (PK-like) 3 274 IPR011009 -
Cone6ag1401 362 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1401 362 CDD STKc_MAPKKK 2 273 - -
Cone6ag1401 362 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1401 362 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 274 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1175 Cone-Chr15:9476846 Cone6ag1401 Cone-Chr6:11268172 1.99E-60 dispersed
Cone6ag1401 Cone-Chr6:11268172 Cone7ag1039 Cone-Chr7:7988622 2.64E-75 dispersed
Cone12ag0124 Cone-Chr12:665003 Cone6ag1401 Cone-Chr6:11268172 1.81E-119 wgd
Cone6ag1401 Cone-Chr6:11268172 Cone8ag0131 Cone-Chr8:677629 6.64E-115 wgd
Cone6ag1401 Cone-Chr6:11268172 Cone9ag1329 Cone-Chr9:9976718 1.59E-229 wgd
Cone6ag1401 Cone-Chr6:11268172 Cone9ag1239 Cone-Chr9:9076150 9.51E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82968 PF00722 Glyco_hydro_16 1.30E-37 CL0004 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1401 - - - 0.0