Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1405 ATGTGGGACCTTAACGATTCGCCTGATCGGAGAATGGGGGATGGAGCGGAGGGATATTCCTCACCCATTGACGGCGGCGACGATGAGAAGGGAAAACGGGTCGGTTCCGTCTCGAATTCCAGCTCATCAGCGGTGGTTATAGAGGATGGATCCGAGGAAGATGAAACTATTACCGGCGATGGAGGGATGTTAAGATTAGGCGTAGAAAAAACCGTCGGAGAAGGCGGGAACAGCAAGATTTTCGGATTCGCCATGGATACCGACCATCCCAGTCATCCGGTGACCCGACAGTTTTTTCCGGTGGGAGAGTCCGAAATGGATGACGTCGTGCCGGTCGGCGGCGGCGGGCGAAACTCGAAAAGTAGTACTGTTAGTAGTAGTGTCAACGGTGGAGCTGTGTCTGCTTTTCCAAGGGCTCACTGGGTCGACGTAAAATTCAGCCAGAGCGTTGACCCACTCGGCTCGGCGGCTAAGTTTCTAGAAGCTTCGCAGCCGATGAAGAAGAGCCGGCGTGGACCCAGGTCGAGAAGCTCACAGTATCGTGGCGTCACTTTTTACCGGCGAACTGGCCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTTTATCTTGGTGGATTTGATACTGCACACGCAGCTGCACGTGCATATGATAGAGCGGCCATCAAGTTTCGAGGGATGGGCGCAGACATTAACTTCAGCATTGAAGACTATGGAGAAGATCTAAAGCAGATGAGCAATTTGACAAAGGAGGAATTTGTGCATGTACTAAGGAGACAAAGCACAGGGTTCCCGAGAGGAAGCTCAAAGTATAGAGGTGTTACTTTACACAAGTGTGGTAGATGGGAAGCTCGCATGGGCCAGTTTCTAGGCAAAAAGTACGTTTATTTGGGTTTGTTCGATACCGAGATGGAAGCTGCCCGGGCATATGACAAAGCTGCGATTAAGTTTAATGATTCACCAGTTAATAATAGCAATAATAATAGTAGTAGTAGTCATACTGCTGCTGCTGCTGCTGGTCATGATAATCATCACAACCTTGATTTGAGTTTGGGAAATTCAAGCTCAAAGCCAATCGATCAACCCTTATCATCTATGGGTCCATTTGAAATTGATTTATGGAATCAGGGTTATAGGCCTCAGGAGGAGTTAACTGGAGATATTATTAATAATGGCGCCGGACAAAGAAGAAACGGGTATTTTGAGTCGGAAACTGCTCGACTTCTCGCCCGAACAAGTCTTAACTCTCCAGCTTCGAATGAACTACAACAACAGAATTACATGCAGTTGTTCCAAAGGGTTGATCAAGATCAGTCTTCTCTAATGCTCTACAGCAACCCCCACACATTCCTTAATCCATCAAATTATCAAATTAATCAAGAGTTAGTAATAGGCAGCAGCAGTAGTAATATTGAAGGGCGAATAGGAAGTGATCTATCCCTGTGTATGAGTGACCGCGAATTGCAGCAATCCAGCAGTACTTCGCAACTGTTTGCAACTGCTGCAGCAGCATCATCAGGATTCCCATCGACGTCGCAGATTAATATCAACGGACCCTACGCCTCTTCCTCTCCATCTCCAAACTGGCTGCACAAAAGTGGGCTCCACTCCTCCTCTCTCGTCTAA 1629 47.64 MWDLNDSPDRRMGDGAEGYSSPIDGGDDEKGKRVGSVSNSSSSAVVIEDGSEEDETITGDGGMLRLGVEKTVGEGGNSKIFGFAMDTDHPSHPVTRQFFPVGESEMDDVVPVGGGGRNSKSSTVSSSVNGGAVSAFPRAHWVDVKFSQSVDPLGSAAKFLEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGMGADINFSIEDYGEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEMEAARAYDKAAIKFNDSPVNNSNNNSSSSHTAAAAAGHDNHHNLDLSLGNSSSKPIDQPLSSMGPFEIDLWNQGYRPQEELTGDIINNGAGQRRNGYFESETARLLARTSLNSPASNELQQQNYMQLFQRVDQDQSSLMLYSNPHTFLNPSNYQINQELVIGSSSSNIEGRIGSDLSLCMSDRELQQSSSTSQLFATAAAASSGFPSTSQININGPYASSSPSPNWLHKSGLHSSSLV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11297736 11301374 - Conep06aG0146400.1 Cone6ag1405 440289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1405 542 CDD AP2 270 318 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 MobiDBLite consensus disorder prediction 320 363 - -
Cone6ag1405 542 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 Pfam AP2 domain 270 318 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 MobiDBLite consensus disorder prediction 320 338 - -
Cone6ag1405 542 FunFam AP2-like ethylene-responsive transcription factor 178 237 - -
Cone6ag1405 542 MobiDBLite consensus disorder prediction 1 61 - -
Cone6ag1405 542 Gene3D AP2/ERF domain 178 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 Gene3D AP2/ERF domain 270 327 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 MobiDBLite consensus disorder prediction 523 542 - -
Cone6ag1405 542 SUPERFAMILY DNA-binding domain 270 320 IPR016177 GO:0003677(InterPro)
Cone6ag1405 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 359 - -
Cone6ag1405 542 ProSiteProfiles AP2/ERF domain profile. 179 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 ProSiteProfiles AP2/ERF domain profile. 271 329 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677(InterPro)
Cone6ag1405 542 MobiDBLite consensus disorder prediction 348 363 - -
Cone6ag1405 542 SMART rav1_2 179 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1405 542 SMART rav1_2 271 333 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1405 Cone-Chr6:11297736 Cone6ag1474 Cone-Chr6:11740377 5.05E-40 dispersed
Cone12ag0139 Cone-Chr12:721303 Cone6ag1405 Cone-Chr6:11297736 1.12E-131 wgd
Cone6ag1405 Cone-Chr6:11297736 Cone8ag0138 Cone-Chr8:727322 1.64E-139 wgd
Cone6ag1405 Cone-Chr6:11297736 Cone9ag1333 Cone-Chr9:10006464 3.56E-283 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46396 PF00579 tRNA-synt_1b 2.70E-23 CL0039 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1405 K09284 - mtr:11407832 481.1