Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1406 ATGGACGGGGGAGATGAGAAGAGCAGAGAGTCAACGAGGAAGAGATCGAACGTCGTCGTAGAGAATCAGAGATCGTACAAAGGGATAAGGATGAGGAAGTGGGGCAAATGGGTGGCTGAGATTCGAGAGCCGAATAAGCGATCCAGGATTTGGCTGGGCTCGTACTCCTCCCCCGTGGCGGCGGCTAGAGCCTACGACACGGCGGTGTTTCATTTACGAGGCCCCTCAGCTCAACTGAATTTTCCCGAGTTGTTAGCTGGAGAGAGCTGCGGGTTTGGCGGAGCCGGATCGGGCGACATGTCGGCTGCTTCTATAAGGAAGAGAGCGGCAGAAGTCGGAACGCGGGTCGATGCACTTCAGACTGCTCTAACTCAACATCACCATCTTCAAAGTCAACATGCATCGACGGCGGCGAGTCATGAGCTGAAGGCTTGTGGAGGGTTCTTGGACCGGGTCGACTTGAATAAGTTACCCGACCCAGAAGATTCCGATGGTGAGTGTGAGTGGGACTGTGGGAGAGAAATTAAACAGTGA 534 54.31 MDGGDEKSRESTRKRSNVVVENQRSYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSAQLNFPELLAGESCGFGGAGSGDMSAASIRKRAAEVGTRVDALQTALTQHHHLQSQHASTAASHELKACGGFLDRVDLNKLPDPEDSDGECEWDCGREIKQ 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11316885 11317854 - Conep06aG0146500.1 Cone6ag1406 440290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1406 177 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cone6ag1406 177 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 CDD AP2 26 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 MobiDBLite consensus disorder prediction 157 177 - -
Cone6ag1406 177 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677(InterPro)
Cone6ag1406 177 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1406 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1406 Cone-Chr6:11316885 Cone7ag0962 Cone-Chr7:7465563 4.50E-23 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone6ag1406 Cone-Chr6:11316885 2.08E-73 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone6ag1406 Cone-Chr6:11316885 3.45E-48 wgd
Cone17ag1275 Cone-Chr17:9178604 Cone6ag1406 Cone-Chr6:11316885 2.54E-17 wgd
Cone20ag0201 Cone-Chr20:868165 Cone6ag1406 Cone-Chr6:11316885 1.40E-47 wgd
Cone4ag1590 Cone-Chr4:12138815 Cone6ag1406 Cone-Chr6:11316885 1.61E-44 wgd
Cone6ag1406 Cone-Chr6:11316885 Cone7ag1360 Cone-Chr7:9870629 1.07E-45 wgd
Cone6ag1406 Cone-Chr6:11316885 Cone8ag0140 Cone-Chr8:740221 3.38E-70 wgd
Cone6ag1406 Cone-Chr6:11316885 Cone9ag1335 Cone-Chr9:10025640 8.46E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46397 PF00579 tRNA-synt_1b 3.80E-16 CL0039 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1406 K09286 - csv:101214481 223.402