Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1421 ATGAGGAAATCTATGCAGAGTCTTCTTGTTCGTCTTTTTGCTATCTTTTCTTTTCTTGTAGTTCAAGCTTTCACTCTGAACAAAGATGGCATTTTTCTGCTCTCCTTCAAGTCCTCTGTTCTAAAAGACCCTTTGTACAAGCTACAGAACTGGAATCCTTACGACGAAACTCCATGCTACTGGAATGGGGTTAAATGCTCTCCTTCTCCTTCTTCTTCTTCTACTCCTGCTAGGGTGATAGAGTTATCTTTACCCAGCTCAGGCATTCTTGGTTCTATCTCACCTGATCTAGGGCTAATTGAAAATCTTCAGAGCCTTAACCTCTCTAACAATTCCTTCAATGGGTCTCTTCCGACGTCGTTTTTTAACGCCACGAAACTTCAGATTCTCGATTTGTCCGGCAATTTGATTTCCGGCGAGTTGCCGGAGAGTATATCCCGACTTAGAAGTCTGCAGGTTCTTAATATTTCCGATAATGCGTTGGCGGGAAAAGTTCCTGGAAATCTAACCGTTCTGAGTAATCTCACTGTCGTTTCGTTGCAGAATAATTACTTCTCCGGCAGTCTTTACGGTGGATTTGGTGGATCTGTTCAGTTTCTAGATCTGTCTTCGAATCTGATTAATGGGTCTCTGCCTTCTGATTTTGGAGGAGATGGTTTTCGTTACTTCAATATTTCTTATAACAAACTTTCCGGGATGATCCCGGGCGGGTTTTCCGAGAACATTCCGGATCAAGCAGTCCTTGATTTCTCATTTAACAATCTCTCTGGCGAGATTCCTCAGTTGAAGATTTTTACTGATCAGAAAACGTCGTCGTTTTCTGGGAATCCTGATCTATGTGGACTTCCTACAAAGATTCCTTGTCCAATCGTGTCCTCTCCAGCTTTTGCTCCGAACGTGACGGGACCGTCTGATTCTCCTCCGGCAATAGCCGCTATTCCGAAAATGGACCCGAACGGGTCGGATCGAGAATCCAACTCAACCGGATCGGAACCAGACCGGACTAAACAAATCAAGACATGGGTCAAACCCACTACGATCATTGCGATCGTGTTTGCGGATATTGCCGGAATCGGAATCCTCCTCTTGATTTTCTCGTGCATATGCAAATCCAAGAGAAAGTCGAAGAATATTGAGGCCGATCTCAAGCGCGAAGCGAGCTTCGGAAGAGACAATTGGTCAACATTTTCTCCTTCCGAAGAATCTGGAGGATTTACAAAGTGGTCGTGTCTAAGGAAAAGAGGGAACGAAGAAGAAAAAGAAGACGACGCCGACGAGAATTCAGAAACCGGTTCAGGAGAAGAAGACCACACCGGTCAAGTAAATCAAGGGTTGAGAGAGCAGGGGCAGGGGCAGGGTAAGAGAGGTACGTTAGTGACCGTTGATGGGGAGAAGGAATTGGAGCTGGAGACGTTGCTAATGGCTTCAGCTTATATCTTAGGGGCGACCGGGTCGAGCATAATGTACAAGGCGGTTCTTGAAGATGGGACGAGCCTAGCGGTTCGTAGGATCGGGGAGAGTCATGTGGAGCGGTTCAAGGAGTTCGAGAGCCAGGTCAAGATTGTGGCCAAATTGGTGCACCCCAATTTGATTCGGGTTCGTGGCTTTTACTGGGGTGTTGATGAGAAGCTCATCATCTATGACTTCGTACCCAACGGTAGTCTTGCCAATGCTCGTTACAGGAAGGTGGGCTCATCACCTTGTCATCTTCCTTGGGAAAGCAGGCTGAAGATTGCGAAAGGGATAGCTCGTGGGCTGGCATACCTCCACGAAAAGAAGCATATCCATGGCAATTTGAAGCCCAGTAATATTCTTCTGGGCGATGATTTAGAGCCCAAAATAGGCGATTTTGGGCTTGAGAAGCTCTTACCAGGTGATACAAGCTATAAATCAGGAGGCTCGGCCCGACATTTCGGGAGCAAGAGATCAACAGCGTCACGCGACAGCTTCCAAGATCTTTCGCATGGGCCCAGCCCAAGCCCAAGTCCGAGCTCAATCGGCTTATCGCTTTATCACGCGCCTGAATCCCTTAGAAGCATCAAGCCCAACCCAAAATGGGACGTGTATTCTTTCGGAGTAATATTGCTGGAATTGCTAACGGGTAAGGTCATTGTGTTGGATGAAATGGGACTTGGGCTTGGGCTTGCGGTTGAAGATAAGAATCGGGCTTTAAGAATGGCTGACGTGTCGATTCGCACTGACGTGGAGGGTAGAGAAGATATTTTGCTGTCTTGCTTTAAGTTAGGATATAGTTGTGCATCTCCGACCCCACAGAAGAGGCCGTCAATGAAAGAAGCCCTACAAACTCTAGAGAAGCTACCTTCTTTATCTTCACCCTACGGTTATTATGTTCCTTAG 2358 46.73 MRKSMQSLLVRLFAIFSFLVVQAFTLNKDGIFLLSFKSSVLKDPLYKLQNWNPYDETPCYWNGVKCSPSPSSSSTPARVIELSLPSSGILGSISPDLGLIENLQSLNLSNNSFNGSLPTSFFNATKLQILDLSGNLISGELPESISRLRSLQVLNISDNALAGKVPGNLTVLSNLTVVSLQNNYFSGSLYGGFGGSVQFLDLSSNLINGSLPSDFGGDGFRYFNISYNKLSGMIPGGFSENIPDQAVLDFSFNNLSGEIPQLKIFTDQKTSSFSGNPDLCGLPTKIPCPIVSSPAFAPNVTGPSDSPPAIAAIPKMDPNGSDRESNSTGSEPDRTKQIKTWVKPTTIIAIVFADIAGIGILLLIFSCICKSKRKSKNIEADLKREASFGRDNWSTFSPSEESGGFTKWSCLRKRGNEEEKEDDADENSETGSGEEDHTGQVNQGLREQGQGQGKRGTLVTVDGEKELELETLLMASAYILGATGSSIMYKAVLEDGTSLAVRRIGESHVERFKEFESQVKIVAKLVHPNLIRVRGFYWGVDEKLIIYDFVPNGSLANARYRKVGSSPCHLPWESRLKIAKGIARGLAYLHEKKHIHGNLKPSNILLGDDLEPKIGDFGLEKLLPGDTSYKSGGSARHFGSKRSTASRDSFQDLSHGPSPSPSPSSIGLSLYHAPESLRSIKPNPKWDVYSFGVILLELLTGKVIVLDEMGLGLGLAVEDKNRALRMADVSIRTDVEGREDILLSCFKLGYSCASPTPQKRPSMKEALQTLEKLPSLSSPYGYYVP 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11390191 11393066 - Conep06aG0148000.1 Cone6ag1421 440305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1421 785 MobiDBLite consensus disorder prediction 646 667 - -
Cone6ag1421 785 Gene3D Transferase(Phosphotransferase) domain 1 550 778 - -
Cone6ag1421 785 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515(InterPro)
Cone6ag1421 785 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Cone6ag1421 785 Gene3D Phosphorylase Kinase; domain 1 452 549 - -
Cone6ag1421 785 PANTHER OS05G0588300 PROTEIN 172 774 IPR050994 -
Cone6ag1421 785 Gene3D Ribonuclease Inhibitor 194 290 IPR032675 -
Cone6ag1421 785 ProSiteProfiles Protein kinase domain profile. 474 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1421 785 MobiDBLite consensus disorder prediction 320 337 - -
Cone6ag1421 785 Pfam Protein kinase domain 480 768 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1421 785 Gene3D Ribonuclease Inhibitor 26 193 IPR032675 -
Cone6ag1421 785 SUPERFAMILY L domain-like 26 284 - -
Cone6ag1421 785 MobiDBLite consensus disorder prediction 303 337 - -
Cone6ag1421 785 SUPERFAMILY Protein kinase-like (PK-like) 479 774 IPR011009 -
Cone6ag1421 785 Pfam Leucine Rich Repeat 197 216 IPR001611 GO:0005515(InterPro)
Cone6ag1421 785 CDD STKc_IRAK 480 773 - -
Cone6ag1421 785 MobiDBLite consensus disorder prediction 414 457 - -
Cone6ag1421 785 FunFam Leucine-rich repeat receptor-like protein kinase 26 191 - -
Cone6ag1421 785 MobiDBLite consensus disorder prediction 434 455 - -
Cone6ag1421 785 FunFam Leucine-rich repeat receptor-like protein kinase 196 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0425 Cone-Chr6:2063811 Cone6ag1421 Cone-Chr6:11390191 3.49E-92 dispersed
Cone6ag1421 Cone-Chr6:11390191 Cone13ag0812 Cone-Chr13:7457178 4.91E-49 dispersed
Cone6ag1421 Cone-Chr6:11390191 Cone8ag0145 Cone-Chr8:757781 1.32E-210 wgd
Cone6ag1421 Cone-Chr6:11390191 Cone8ag1108 Cone-Chr8:9866904 1.25E-165 wgd
Cone6ag1421 Cone-Chr6:11390191 Cone9ag1347 Cone-Chr9:10099847 3.99E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82969 PF00076 RRM_1 4.10E-15 CL0221 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1421 - - - 0.0