Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag1431 | ATGACGCAAATATCCCCACCTTCCCCAACTGATCTGCCCTGCTCTAACCGCTACAAAGTTAATTTGATTAGGAAAAAGAATGAAAATGAAAAATTGAAAGAAAGCTCAAGCTCAAGCTCAAGCTCAAGGGGAAGTAGAAGGCGGAGTGTGGATTCAAAAGCTCGAGAGTTTTATTTTTCAGGTGTAATGGAGATATCATTGCTAAAGATGCTGCTGAACCAGATCTCCTTGTTTTCTAATCTATCATCTTGTGATTGTATAAACTCGGAGTGTGTTCTGAAATATTACCAAAAGGCAGAGGATATATTGAAGTTGTTGAAGCCAGTGCTACATGCACTCTTTGGATCTGAAATTGCTTCTGATGAAGTGTTTAAAAATGCATTTGAAGAACTTGGTCATTCCATTGAGGAATTAAGAGAACTTCTTAAAAGCTGGAAACCTTTGGCTAGTAAAGTATATTTAGTTCTTCAAAGTGATTCGCTGATATCAAAGATTCGGAGATCTACTCTTGATATTTTCCAGCTCCTGCAGTGTTCGCATGAATATCTCTCTTCCGAGTTCAGTTCGACTCTTGAGCACTGTGTGCAGAAAATCAAGCATATGGGACATGAAGAAACGCCAACTATAATGAAAGATGCTCTAAGGAATCAATTAGAGGGAGTTGAACCTTGCTCAGATATTTTGGTAAAAATTGCAGACTCTCTAGGCTTGAGGTCAAACCAAGAAATCTTGATTGAGGCTGTGTCTCTCGAAAAGTTGAAAGAGAATGCTGAACAAGTTGAAAGGAATGAAGAAGCCGAATATATTGACCAAATGGTTGCTCTTGTAAATTGCATGCATGACCATCTTATAGTGGCAAAGCAATCTCAAAGCCATAACCAAGTTCCAATACCATCTGATTTCTGTTGTCCTCTCTCTCTTGAGCTGATGACAGACCCTGTGATCGTGGCATCAGGTCAAACCTATGAGCGGTCTTTTATCAAGAGATGGATTGATCTTGGGCTTACTATCTGTCCAAAGACCCGACAAACACTTTCTCACACCAATTTGATACCTAATTATACCGTAAAGGGATTGATTGCAAACTGGTGTGAGCTGCATAAAGTGATGTTGACTGATCCTATCAAGTCAGTGAACTTGACTCGACCATCTGCCCTTTTAGGTAGTAGACAGTCTGATGGAAACACTAAATTTCCAGGGAAGAACCTAAATTCACAGTGTGAAAACCATAAACCATTGCTACGTCGTTCCCAAATGGAAGACTCATTGCCTTCTTCTGCTGGAAATAGTCTGGGTTCAGATATTGCAAGATTATCTCCTAGACATTCAGAAAACACATTGCCCGGTCAAATAAATTTGTCTCCATCCCGAACCAATAATGGGTCTGAACAGCCTAGCAACCATAGTAGAACCTCATCAGCTTCTAGCCCAGTCTCTACTTCTCCTAAAGTAATGTCAAGTGATCTTTCTGGGGATGCAGAATCGGGCTCACAAAGAGAACAAGACTTCCCTGCCAGATTGCTGGATTTGAGAGCTCGAAACCATACACTAAGACGCCGGCCTTCTGATAGGTTTAGACAAAGAATGGTTTCTTCTTCTACCCCTACTGAAATGAGACCTGACCTTTCTGAACTTGAAGCCCAAGTCCAAAAGCTGATTCAAGACTTAAATAACCCTTCACCCGATACAGTAAAAGCAGCTACAGCTGAACTAAGATTGCTAGCCAAGCACAATATGGATAACAGGATTGTAATTGCAAATTGTGGAGCTATTACCATCTTAGTCAATTTGCTCCATTCTCAAGACCCAAAGATCCAAGAGAATGCCGTAACAGCTCTTCTTAACTTATCCATCAATGATAATAACAAAACTGCCATTGCTCAGGCTGATGCTATAGAACCCTTAATCCATGTTCTTGAAACTGGGACCCCGGAGGCAAAAGAGAATTCCGCTGCTACTCTCTTTAGCCTTTCAGTGATAGAGGATAACAAGGTCAGGATCGGACGGTCAGGAGCGATCATTCCTTTAGTTGATTTATTAGGGAATGGAACTCCTAGAGGAAAGAAAGATGCAGCCACTGCTTTGTTTAATTTATCAATTTTTCATGAAAACAAGGCGAGGGTTGTACAAGCAGGAGCTGTAAGGCATTTAGTAGAGTTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCAGTTGCTGTTTTGTCTAATCTTGCTACAATTTTGGAGGGAAGGAATGCTATTGGTCAGGAGGGTGGCATCCCTGTTTTGGTCGAGGTGGTTGAGTTGGGTTCAGCTAGAGGAAAGGAGAATGCAGCTGCTGCTTTACTGCACCTTTGTACTAATAGTAGTAGGTTCTGTAATATGGTGCTTCAGGAAGGGGCGGTCCCACCATTAGTGGCGCTTTCGCAATCGGGAACTCCTAGGGCTAAAGAAAAGGCTCAGGCACTTCTTAGCTATTTCAGAAACCATAGACATGGTAATGCTGGTAGAGGGTGA | 2499 | 41.74 | MTQISPPSPTDLPCSNRYKVNLIRKKNENEKLKESSSSSSSSRGSRRRSVDSKAREFYFSGVMEISLLKMLLNQISLFSNLSSCDCINSECVLKYYQKAEDILKLLKPVLHALFGSEIASDEVFKNAFEELGHSIEELRELLKSWKPLASKVYLVLQSDSLISKIRRSTLDIFQLLQCSHEYLSSEFSSTLEHCVQKIKHMGHEETPTIMKDALRNQLEGVEPCSDILVKIADSLGLRSNQEILIEAVSLEKLKENAEQVERNEEAEYIDQMVALVNCMHDHLIVAKQSQSHNQVPIPSDFCCPLSLELMTDPVIVASGQTYERSFIKRWIDLGLTICPKTRQTLSHTNLIPNYTVKGLIANWCELHKVMLTDPIKSVNLTRPSALLGSRQSDGNTKFPGKNLNSQCENHKPLLRRSQMEDSLPSSAGNSLGSDIARLSPRHSENTLPGQINLSPSRTNNGSEQPSNHSRTSSASSPVSTSPKVMSSDLSGDAESGSQREQDFPARLLDLRARNHTLRRRPSDRFRQRMVSSSTPTEMRPDLSELEAQVQKLIQDLNNPSPDTVKAATAELRLLAKHNMDNRIVIANCGAITILVNLLHSQDPKIQENAVTALLNLSINDNNKTAIAQADAIEPLIHVLETGTPEAKENSAATLFSLSVIEDNKVRIGRSGAIIPLVDLLGNGTPRGKKDAATALFNLSIFHENKARVVQAGAVRHLVELMDPAAGMVDKAVAVLSNLATILEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSYFRNHRHGNAGRG | 832 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11480343 | 11484626 | + | Conep06aG0149000.1 | Cone6ag1431 | 440315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag1431 | 832 | MobiDBLite | consensus disorder prediction | 25 | 48 | - | - | |
| Cone6ag1431 | 832 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 589 | 631 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | PANTHER | U BOX DOMAIN-CONTAINING | 93 | 824 | - | - | |
| Cone6ag1431 | 832 | Coils | Coil | 15 | 35 | - | - | |
| Cone6ag1431 | 832 | MobiDBLite | consensus disorder prediction | 439 | 497 | - | - | |
| Cone6ag1431 | 832 | SUPERFAMILY | ARM repeat | 548 | 821 | IPR016024 | - | |
| Cone6ag1431 | 832 | Pfam | Armadillo/beta-catenin-like repeat | 703 | 739 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | Pfam | Armadillo/beta-catenin-like repeat | 580 | 617 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | Pfam | Armadillo/beta-catenin-like repeat | 662 | 699 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | CDD | RING-Ubox_PUB | 298 | 350 | IPR045210 | - | |
| Cone6ag1431 | 832 | MobiDBLite | consensus disorder prediction | 386 | 506 | - | - | |
| Cone6ag1431 | 832 | SUPERFAMILY | RING/U-box | 287 | 374 | - | - | |
| Cone6ag1431 | 832 | Gene3D | - | 689 | 828 | IPR011989 | - | |
| Cone6ag1431 | 832 | SMART | arm_5 | 701 | 740 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | SMART | arm_5 | 741 | 781 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | SMART | arm_5 | 578 | 618 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | SMART | arm_5 | 619 | 659 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | SMART | arm_5 | 782 | 823 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | SMART | arm_5 | 660 | 700 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | Gene3D | - | 527 | 686 | IPR011989 | - | |
| Cone6ag1431 | 832 | FunFam | RING-type E3 ubiquitin transferase | 533 | 827 | - | - | |
| Cone6ag1431 | 832 | SMART | Ubox_2 | 300 | 363 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone6ag1431 | 832 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 712 | 753 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | MobiDBLite | consensus disorder prediction | 519 | 540 | - | - | |
| Cone6ag1431 | 832 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 671 | 713 | IPR000225 | GO:0005515(InterPro) | |
| Cone6ag1431 | 832 | Pfam | U-box domain | 297 | 368 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone6ag1431 | 832 | ProSiteProfiles | U-box domain profile. | 296 | 370 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone6ag1431 | 832 | FunFam | RING-type E3 ubiquitin transferase | 296 | 371 | - | - | |
| Cone6ag1431 | 832 | MobiDBLite | consensus disorder prediction | 419 | 433 | - | - | |
| Cone6ag1431 | 832 | Coils | Coil | 240 | 270 | - | - | |
| Cone6ag1431 | 832 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 374 | IPR013083 | - | |
| Cone6ag1431 | 832 | MobiDBLite | consensus disorder prediction | 386 | 412 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag1137 | Cone-Chr4:9801752 | Cone6ag1431 | Cone-Chr6:11480343 | 1.94E-83 | dispersed | |
| Cone6ag1431 | Cone-Chr6:11480343 | Cone7ag0992 | Cone-Chr7:7652318 | 3.39E-104 | dispersed | |
| Cone12ag0156 | Cone-Chr12:793911 | Cone6ag1431 | Cone-Chr6:11480343 | 3.13E-221 | wgd | |
| Cone16ag0127 | Cone-Chr16:718916 | Cone6ag1431 | Cone-Chr6:11480343 | 1.54E-08 | wgd | |
| Cone6ag1431 | Cone-Chr6:11480343 | Cone8ag0150 | Cone-Chr8:776871 | 1.06E-208 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag1431 | - | - | - | 0.0 |