Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1458 ATGGATACTTTGTTTAGACTGTTCAGTAGCAGTAGTAGTACTCTTCAATCCGATCATCTTCATCTTGATCATCACCAATCTTACAACTCTAGCAGAACTTCAAGCAGCTCCAGATCAGAGCTTCAATCTGATCATCACTACCTGCAACAAGATCGTCATCATCAAAACGAAGAATCCTTGAACCATTTCAATGATTTCATGGAAGAGGAAGATTTCTCCTCCTCCAATTCTACTCATTATAACTACCCCTACTCTTCAACCACCGCCGCCACCACCATCACCACCGCCACCACTACCACCACTCCGACTCAAGCCGATCGGTATTTCTCCTGCTCACCTTCTCATCATGACTTGATCAACTTTGAATTTTCCGGCAAGTGGTCCCACAACATGCTACTCCAAACGGCTCAAGCAATAACGGAAAATAACAGTACACGTGTCCAACAACTGATGTGGGCCCTCAATGAGCTAAGCTCGCCGTATGGTGACATAGACCAGAAGCTCACAGCCTACTTCCTCAAGGCCTTGTTCACTCGCGTAACTGACTCCGGCGAAAGAAGCTACCGGTCTCTAACCGCCGCGTCGGAGAAATCGTCTTCCTTCGATTCGACGAGGAAAAACATCTTGAAGTTTCAAGAGGTCAGCCCTTGGACTACGTTCGGACACGTATCAGCTAACGGTGCGATCATGGAAGCCTTCGAGAACGAATCGAAGCTCCATATCATCGATTTCAGCAGTACGTTTTGTACGCAATGGCCTACTTTACTCGAAGCGATCGCGACTCGTACGGACGAAACACCGCATCTGAAGCTAACAACCGTGATCGCGACCAGGAATGGTGGCGGAGAAGGCGGAGAGTCGCCAGCGGCAGCTCAGAAGGTCATGAAAGAAATAGGTGCGAGGATGGAGAAGTTCGCTAGGCTTATGGGAGTTCCGTTCAAGCTCAAAGCTATATATCATTCCGGCGATCTTTCAGATCTGAACTTAGCGGAGTTAGATATTAAAGAAGACGAAGCGTTAGCGATTAACTGCATCGGCGCGTTACACTCAGTCGCTCCGATCAACAACCGAAGAGATTATCTAATTTCGTTTTTTAGAAGCTTAAGGCCTAGAGTGATTACCGTGGTTGAAGAAGAAGCCGATCTGGATGTCGGAATTGACGGGATCGATTTCGTGAAAGGATTCCAAGAATGTCTGAGCTGGTTCAGGCTTTACTTCGAGACGTTAGAGGAGAGCTTTACGAGGGTGAGCAACGAGCGATTGATGCTAGAGCGAGCGGCGGGACGAGCGATCGTCGATCTGGTGGCGTGTCCGTCTTCTGAGTCGGTTGAGCGTCGGGAATCGGCAAAGCGGTGGATAGGGCGATTTAATGGGAGTGGATTCAGTACTGTGGCTTTTAGCGATGAGGTATGTGATGACGTGCGCGCTTTGTTGAGGAGGTATAAGGAGGGATGGTCGATGGTACAGAGATCCGACGGAGCCGGAATATTCTTGGCTTGGAAGGATCAGCCGGTGGTTTGGGCGAGTGTATGGCGGCCCTGA 1542 49.16 MDTLFRLFSSSSSTLQSDHLHLDHHQSYNSSRTSSSSRSELQSDHHYLQQDRHHQNEESLNHFNDFMEEEDFSSSNSTHYNYPYSSTTAATTITTATTTTTPTQADRYFSCSPSHHDLINFEFSGKWSHNMLLQTAQAITENNSTRVQQLMWALNELSSPYGDIDQKLTAYFLKALFTRVTDSGERSYRSLTAASEKSSSFDSTRKNILKFQEVSPWTTFGHVSANGAIMEAFENESKLHIIDFSSTFCTQWPTLLEAIATRTDETPHLKLTTVIATRNGGGEGGESPAAAQKVMKEIGARMEKFARLMGVPFKLKAIYHSGDLSDLNLAELDIKEDEALAINCIGALHSVAPINNRRDYLISFFRSLRPRVITVVEEEADLDVGIDGIDFVKGFQECLSWFRLYFETLEESFTRVSNERLMLERAAGRAIVDLVACPSSESVERRESAKRWIGRFNGSGFSTVAFSDEVCDDVRALLRRYKEGWSMVQRSDGAGIFLAWKDQPVVWASVWRP 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11652857 11654449 - Conep06aG0151700.1 Cone6ag1458 440342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1458 513 MobiDBLite consensus disorder prediction 21 55 - -
Cone6ag1458 513 ProSiteProfiles GRAS family profile. 119 512 IPR005202 -
Cone6ag1458 513 MobiDBLite consensus disorder prediction 27 43 - -
Cone6ag1458 513 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 511 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cone6ag1458 513 Pfam GRAS domain family 130 512 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1405 Cone-Chr12:10309798 Cone6ag1458 Cone-Chr6:11652857 2.11E-50 dispersed
Cone6ag1458 Cone-Chr6:11652857 Cone8ag1463 Cone-Chr8:11245408 3.42E-52 dispersed
Cone12ag0168 Cone-Chr12:849079 Cone6ag1458 Cone-Chr6:11652857 3.39E-204 wgd
Cone6ag1458 Cone-Chr6:11652857 Cone8ag0163 Cone-Chr8:841984 4.12E-200 wgd
Cone6ag1458 Cone-Chr6:11652857 Cone9ag1379 Cone-Chr9:10321643 2.37E-290 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46403 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1458 K27743 - rcu:8283369 664.455