Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1474 ATGACTATGGAGCTTAATAGTAATAATAGTATCAATCCTTCTTCTTCTTCTTCTTCATCTGCCTCCGCCTCGCTTCAACTTACCAGCTATGGTTTCTTCTATGGAGTTCCTGATCATCAAAATGCCGCCTTTTACTCTCCTCTCTCTGTCATGCCTCTCAAATCTGATGGCTCTCTTTGCGTCATGGAATCTCTCTCCAGATCACTTCCCCAAGTAACTAGTTCAACTCCAAAACTAGAAGACTTCTTTGGAGGCACAACGATGGGTGGAAGCCATCATCATTATGAAAACAACAATATTGGTAACAGAGAAGCCATGGCTCTAAGCTTAAACAGCATGTTCTATCACCAACCCAACAGCCAAGAACAGGATCAGCACCAGGTTATTAAAAGTTATTACAACTCTAAGGAGACTAGTGATCACACAATGGCTGCTGCAAATAATGATCATTTCTCTTCAGTGTCTGTTAATGGAAATAGTAATAATAATAATAGTGCAATAATGGGTTGTGGAGATCTGAAGGCGTTGAGCTTGTCGATGAGTCCCAGGTCCCAGTCGAGCTGCGTTACGGCTTCGGTTCAAGTTTCTAATTGTATGCTGAATGATTGTATTGATGAAGGTCATCATGTGGTTGTAATGGATACAAAGAAGAGAGGGAGATCAGAAAGTGGATCAAAGACAGCTTTTCCTAGGAAGTCTTTGGACACTTTCGGACAGAGGACTTCTCAATATAGAGGTGTTACAAGGCATAGATGGACTGGAAGATATGAAGCACATTTATGGGATAATAGTTGCAAGAAAGAAGGTCAAAGCAGGAAAGGAAGACAAGGTGGGTATGATGTGGAAGAAAAAGCTGGTAGAGCATATGATCTTGCTGCACTGAAGTACTGGGGAGCTTCCACTCATATCAACTTCCCATATGAGAATTATGAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGACAAGAATACGTAGCTCACCTAAGGAGGAAAAGCAGTGGATTCTCAAGGGGAGCTTCAATCTACAGAGGAGTAACAAGACATCATCAGCATGGAAGATGGCAAGCTCGGATCGGTAGAGTTGCCGGGAACAAAGATCTCTATCTCGGAACTTTTAGCACACAAGAGCAGGCAGCGGAGGCTTACGACATAGCGGCCATAAAATTCCGAGGCCTAAAAGCTGTAACAAACTTCGACATGACTCGGTACGATGCTGAACGGATCATGTCAAGCAACACACTTCTCGCCGGAGAATTAGCCAAACGCAACATTCATAAGGGTCCCGTGGGGCCCGACAGCATCGATGCATATGATCACACCCAAAATACCCTCTTGGCGCATACCATCAATGGGAATATGATCGGAATCGGAAACGTGATGTCGGATTGGAAAACCGCACTCTACCCATCATCAGAGCCACTAAGCCAAATGCAGGGAAGTAATGAGAATTACCAACTAGAAGCGGTTAAACAGGCCCCGCATCTGTCGAACGAGTCATCATCTTTGGTTACGAACTTGAGCGGGTCCAGGGAAGGTAGTGCTGTGAGTTCTTGGATAACTTGTAGCCAGCAGCCCGAGATGCCGTTTTTTGCTGCCTGGAACGATGCTTAA 1614 44.24 MTMELNSNNSINPSSSSSSSASASLQLTSYGFFYGVPDHQNAAFYSPLSVMPLKSDGSLCVMESLSRSLPQVTSSTPKLEDFFGGTTMGGSHHHYENNNIGNREAMALSLNSMFYHQPNSQEQDQHQVIKSYYNSKETSDHTMAAANNDHFSSVSVNGNSNNNNSAIMGCGDLKALSLSMSPRSQSSCVTASVQVSNCMLNDCIDEGHHVVVMDTKKRGRSESGSKTAFPRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDVEEKAGRAYDLAALKYWGASTHINFPYENYEKELEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEQAAEAYDIAAIKFRGLKAVTNFDMTRYDAERIMSSNTLLAGELAKRNIHKGPVGPDSIDAYDHTQNTLLAHTINGNMIGIGNVMSDWKTALYPSSEPLSQMQGSNENYQLEAVKQAPHLSNESSSLVTNLSGSREGSAVSSWITCSQQPEMPFFAAWNDA 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11740377 11744046 + Conep06aG0153300.1 Cone6ag1474 440358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1474 537 SUPERFAMILY DNA-binding domain 341 401 IPR016177 GO:0003677(InterPro)
Cone6ag1474 537 CDD AP2 242 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 SMART rav1_2 342 406 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 SMART rav1_2 243 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 134 434 - -
Cone6ag1474 537 FunFam AP2-like ethylene-responsive transcription factor ANT 242 308 - -
Cone6ag1474 537 FunFam AP2-like ethylene-responsive transcription factor 341 402 - -
Cone6ag1474 537 PRINTS Ethylene responsive element binding protein signature 382 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 ProSiteProfiles AP2/ERF domain profile. 342 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 Gene3D AP2/ERF domain 242 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 Gene3D AP2/ERF domain 342 402 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 SUPERFAMILY DNA-binding domain 242 308 IPR016177 GO:0003677(InterPro)
Cone6ag1474 537 ProSiteProfiles AP2/ERF domain profile. 243 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 CDD AP2 341 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag1474 537 Coils Coil 307 327 - -
Cone6ag1474 537 Pfam AP2 domain 343 392 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0244 Cone-Chr20:1080995 Cone6ag1474 Cone-Chr6:11740377 1.39E-113 dispersed
Cone4ag1633 Cone-Chr4:12351513 Cone6ag1474 Cone-Chr6:11740377 2.24E-138 dispersed
Cone5ag1468 Cone-Chr5:9723706 Cone6ag1474 Cone-Chr6:11740377 1.50E-106 dispersed
Cone6ag1405 Cone-Chr6:11297736 Cone6ag1474 Cone-Chr6:11740377 5.05E-40 dispersed
Cone6ag1474 Cone-Chr6:11740377 Cone9ag1333 Cone-Chr9:10006464 1.23E-42 dispersed
Cone6ag1474 Cone-Chr6:11740377 Cone7ag0894 Cone-Chr7:6995942 1.72E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46404 PF02714 RSN1_7TM 2.90E-78 CL0416 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1474 K09285 - mdm:103404939 534.643