Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1484 ATGAGCAGTTTCAACGATGACCTTGTTCTAGGGTTAGGATTATCGACAAGCCGTGGAGCCATCCAAGAAACTAGCGCATCAAAGGCGGTGGCGGTGATGACCGATCATCGTAAGACATGGGCCCCAGCGAGTCGTTCCAATTTTGCGACCACTTTGACGTTGGGTTTATCAGGAGATCATCCTCTTGATCATCATCGTCATCATAATAACAACAACAATATTTATCAACCGTTGATTGATGGTGTCAAGAAGGGTAGTTGTGATCGGGAAGCTTATTCCTCTCATAGCGGGGTTTCTAATTCATTCTCTAATGGAGGTAGAAGAGGAGTGAAGAGGGAGAGAGATGTTAGTAGTGAAGAATTAGAGGTTGATAATCATCATCAGGGTGATAATCAGAGAGTAACATCTTCAAGAGTAGTAGGCAGTGATGAAGATGAAGATGTTATGAATTATTCTACTAATTGTGCTAGAAAGAAACTTCGGCTCACCAAAGAACAGTCTGCTCTCTTAGAAGAAAGCTTCAAACACCACAGCACTCTCAACCCTAAACAGAAGCAGACTTTAGCAGGGCAGTTGAATCTTCGGCCAAGACAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACGAAACTAAAGCAAACAGAAGTAGATTGTGAATTCCTAAAGAAGTGTTGCGAGAGTTTAACAGATGAGAACAGGAGATTACAGAAAGAAGTTCAAGAATTGAAGGCATTGAAAATTTCTCATGCAACGTCTAATCTGTACATGAAAATGCCGGCAGCAACTCTAACTATGTGCCCTTCTTGTGAAAAGATTAATAACAATGGTAGGCTTTCTCCTAATCATGTTGTTAATCCCAAAACCTCGTTAGTTTCCATGGCTGTTTCTAATAAGCCTCATTATTACAATCCCTTCACCAATCCTGCTGCCTGTTAA 939 41.43 MSSFNDDLVLGLGLSTSRGAIQETSASKAVAVMTDHRKTWAPASRSNFATTLTLGLSGDHPLDHHRHHNNNNNIYQPLIDGVKKGSCDREAYSSHSGVSNSFSNGGRRGVKRERDVSSEELEVDNHHQGDNQRVTSSRVVGSDEDEDVMNYSTNCARKKLRLTKEQSALLEESFKHHSTLNPKQKQTLAGQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTDENRRLQKEVQELKALKISHATSNLYMKMPAATLTMCPSCEKINNNGRLSPNHVVNPKTSLVSMAVSNKPHYYNPFTNPAAC 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11792840 11794210 + Conep06aG0154300.1 Cone6ag1484 440368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1484 312 Coils Coil 219 249 - -
Cone6ag1484 312 Pfam Homeodomain 157 211 IPR001356 GO:0003677(InterPro)
Cone6ag1484 312 CDD homeodomain 157 214 IPR001356 GO:0003677(InterPro)
Cone6ag1484 312 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677(InterPro)
Cone6ag1484 312 SMART halz 213 259 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag1484 312 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag1484 312 SMART HOX_1 155 217 IPR001356 GO:0003677(InterPro)
Cone6ag1484 312 Gene3D - 161 211 - -
Cone6ag1484 312 SUPERFAMILY Homeodomain-like 143 214 IPR009057 -
Cone6ag1484 312 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone6ag1484 312 FunFam Homeobox-leucine zipper protein 18 143 218 - -
Cone6ag1484 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 286 IPR050762 -
Cone6ag1484 312 MobiDBLite consensus disorder prediction 107 131 - -
Cone6ag1484 312 MobiDBLite consensus disorder prediction 87 142 - -
Cone6ag1484 312 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0221 Cone-Chr11:1094733 Cone6ag1484 Cone-Chr6:11792840 8.92E-44 dispersed
Cone18ag1261 Cone-Chr18:8891022 Cone6ag1484 Cone-Chr6:11792840 2.93E-44 dispersed
Cone4ag1641 Cone-Chr4:12388560 Cone6ag1484 Cone-Chr6:11792840 1.82E-49 dispersed
Cone6ag0412 Cone-Chr6:1989040 Cone6ag1484 Cone-Chr6:11792840 7.94E-42 dispersed
Cone6ag1484 Cone-Chr6:11792840 Cone9ag0657 Cone-Chr9:3125555 1.53E-54 dispersed
Cone12ag0188 Cone-Chr12:964039 Cone6ag1484 Cone-Chr6:11792840 2.32E-74 wgd
Cone6ag1484 Cone-Chr6:11792840 Cone7ag1311 Cone-Chr7:9619411 2.43E-48 wgd
Cone6ag1484 Cone-Chr6:11792840 Cone8ag0182 Cone-Chr8:956996 4.45E-68 wgd
Cone6ag1484 Cone-Chr6:11792840 Cone9ag1406 Cone-Chr9:10475756 1.44E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46405 PF07967 zf-C3HC 8.50E-33 CL0417 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1484 K09338 - mdm:103405460 269.626