Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1492 ATGTCGATTAGTAATTTCCAGAAACATCAAGCTTTGTTACTTCTACTATCTTTCTTGTTCCTGTTAGTTGTTTCCGTTGTCGGAGATTATAACAAATCCGGCGACTCCGAAATTCTTATTCAGGTGAGAAATTCGGGTCTCGACGACCCGGAGGGAAGTCTTGATAACTGGGTGGTGAACAGTGAGTACAACGCGTGTAATTGGACGGGAATCACTTGCGATGATCGCCACGTGTCCGTCGTTTCTATTGACTTATCCGGGTTTGGGTTGTCTGGCGGGTTTCCTTTTGAGCTCTGTCGGATCCGGACCCTGCGGAACTTATCGTTATCGGATAATAGTATCAATGGCAGTTTGTTATCGTCTTCCCTTTCTCTCTGCTCTCATCTGCAAGTGCTGAATCTCTCCAGTAATTACCTCGTCGGCGAATTGCCGGATTTTTCTCCGGAGTTTAGTGAGCTTAGAGTGATCGATCTCTCTTTCAACAACTTTTCCGGCGAGATACCGGCGAGTTTTTGCCGGTTTCCGAAGCTCAGAGTTCTCAAGCTCATCGAGAATTTACTCAATGGCTCTATTCCTGCTTTCTTAGGCAATCTCAGCGAGTTAACTCGGCTTGAACTCGCTCAAAATCCGTTTCAGGAAAGTCATTTGCCTTCTGAGATCGGAAACTTATCAAAACTCGATAATTTGTTTTTACCGAACACCAATCTCATCGGACCTATTCCAGAGTCAATCGGCAAGTTAGTATCGCTCAGGAACCTCGATTTGTCTAGCAATCGTCTGTCGGGAGAAGTGCCTGAGACTATCGGGGGACTGATAAAAGTGGAACAGATCTTGCTATTTGCGAACCAGATCTCTGGTGAAATTCCTGTTAGCTTAGCGAATTTGAGCAATCTGCGTACTCTGGACGTTTCGCTGAACAGTCTCACCGGAAAGTTACATGAGAAGATCGCTGCAATGCCTCTCGAATACGTGAATCTGAACGACAACTTCCTCGAAGGCGAAATTCCACAGGTTTTTGCTTCGAATCCTAAATTAAGATCGGTAAAACTCTTCAACAACAGTTTTTCAGGCACGCTGCCTGCAAATCTAGGCCGATACGCTGAATTGGAGGAATTCGATGTCTCCACCAACAAATTCGCAGGAAATTTGCCGGAATATTTGTGTTATGGCAAGAAACTTCAACGAATCGTAGCTTTCAACAATGGATTCTCAGGAGTTGTGCCAGAGTCTTACGGTGAGTGCATTTCTCTCTCCTACATTCGAATCGAGAACAACGAACTCTCCGGCAAACTACCAGACAGTTTCTGGAATCTTCCGATGCTTGAATACTTAGGGTTGAGAAACAACGGATTCAAAGGTTCGGTTCCACCTTCAATCTTTAAAGCTAGAGGCCTCACTGTGGTTACAGTATCAGGAAACAACTTCTCCGGCACATTGCCAGATCAACTCTGCAAGTTGAGAAACCTCGTTAAATTTGATGTTAGCGGAAACAACTTTTTTGGTGAGATTCCTTCCTGTATAACTGAATTGAAGAATCTACAGAAGCTTGACTTGCAGGAGAACAATTTTTCTGGCATAATTCCAAGCACGGTGAGCTCATGGACTGTCTTGACCGAGTTAAATCTTTCAGGGAACAGATTATCTGGCCAGATTCCTTATCAGCTCGGTGACTTGCCAGTATTAACATATTTAGATCTTTCTAGAAACATACTTTCCGGCCAAATTCCAATTGAGTTAACAAAGCTGAAGCTAAACCAATTCAATGTATCGGTTAATAAACTGTACGGAAGAGTTCCGACTGGTTTCGATCATGAACTGTTCCTTGCAAGCTTAATGGGCAACCTGAATCTTTGTAGCCCGGATCTGAAGCCACTTCCTCCTTGCCGGAAACCCAAACAGGTCGCTCTGTATGTTATAATTACTTTATCCATAACCGCTCTAGTTCTTATCGGCTCTCTATTATGGGTAGTTAAATCCAAGTTTTATGTATTCAATGGCAAGCGCATGAAGCCATGGAAGGTGGCTGCCTTTCAACGGATCAGATTCAATGAGGAAGACATAATCCCACATCTCACTAGTCGAAACTTAATTGGAGAAGGTGGATCCGGCCGTGTTTATAGAGTATGTCTTAAACCGGGTCATGTTGTTGCTGTAAAGAGACTTTGGAGTGGTAAGAAGGAAGCAGATGCTGAACTGGTTTTCCAATCCGAGGTAGGCTCATTGGGTCAGGTTCGCCACATCAATATTGTGAAACTGCTCTGTAGTTTAAGTGATGGTGAAGATAACAGAACTCTGGTGTATGAGTATATGGAAAATGGTAGCTTAGGTGACGCATTGCACGGACATAGTGATTCTAATTTGTTGGATTGGCAGACGCGGTTCGATATAGCAGTTGGTACGGCACAGGGGCTGGCTTATCTTCATCATGACTGTGTTCCGGCTATAGTGCACCGTGACATTAAGAGTAATAATGTACTCTTAGACGAAGAATTCAGGCCCAAATTGGCTGATTTCGGGTTGGCTAAGACATTGCAACGGGAGGGGGATCCTACTCGTGATGCTATGTCTCGAGTCGTTGGGTCCTACGGCTACATTGCGCCTGAATATGCATATACGATGAAAGTGACAGAGAAGAGTGATGTCTATAGTTTTGGTGTGGTTTTGATGGAAATGGTTACTGGTAAGCGGCCTAATGATGCTTTCTTTGGAGACAATGGTGATATAGTGAAGTGGGTTAGAGGAACTGCTTTATCATGCTTTGCAGAAGAAAATGGCAAAGAGGAAGTACATTGCAGTGACGTGGAGAATCTTAGAGATCCAAGAATGAAGTTATTTACATGTGATTTTGAACAGATTGAAAGAGTTTTGAATGTGGCTCTCCTTTGTACCTCGACATTACCCATCAACAGACCCTCCATGAAAAGGGTAGTTGAGCTCTTAAAAGGCCAGAAACTGTAG 2958 43.75 MSISNFQKHQALLLLLSFLFLLVVSVVGDYNKSGDSEILIQVRNSGLDDPEGSLDNWVVNSEYNACNWTGITCDDRHVSVVSIDLSGFGLSGGFPFELCRIRTLRNLSLSDNSINGSLLSSSLSLCSHLQVLNLSSNYLVGELPDFSPEFSELRVIDLSFNNFSGEIPASFCRFPKLRVLKLIENLLNGSIPAFLGNLSELTRLELAQNPFQESHLPSEIGNLSKLDNLFLPNTNLIGPIPESIGKLVSLRNLDLSSNRLSGEVPETIGGLIKVEQILLFANQISGEIPVSLANLSNLRTLDVSLNSLTGKLHEKIAAMPLEYVNLNDNFLEGEIPQVFASNPKLRSVKLFNNSFSGTLPANLGRYAELEEFDVSTNKFAGNLPEYLCYGKKLQRIVAFNNGFSGVVPESYGECISLSYIRIENNELSGKLPDSFWNLPMLEYLGLRNNGFKGSVPPSIFKARGLTVVTVSGNNFSGTLPDQLCKLRNLVKFDVSGNNFFGEIPSCITELKNLQKLDLQENNFSGIIPSTVSSWTVLTELNLSGNRLSGQIPYQLGDLPVLTYLDLSRNILSGQIPIELTKLKLNQFNVSVNKLYGRVPTGFDHELFLASLMGNLNLCSPDLKPLPPCRKPKQVALYVIITLSITALVLIGSLLWVVKSKFYVFNGKRMKPWKVAAFQRIRFNEEDIIPHLTSRNLIGEGGSGRVYRVCLKPGHVVAVKRLWSGKKEADAELVFQSEVGSLGQVRHINIVKLLCSLSDGEDNRTLVYEYMENGSLGDALHGHSDSNLLDWQTRFDIAVGTAQGLAYLHHDCVPAIVHRDIKSNNVLLDEEFRPKLADFGLAKTLQREGDPTRDAMSRVVGSYGYIAPEYAYTMKVTEKSDVYSFGVVLMEMVTGKRPNDAFFGDNGDIVKWVRGTALSCFAEENGKEEVHCSDVENLRDPRMKLFTCDFEQIERVLNVALLCTSTLPINRPSMKRVVELLKGQKL 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11817691 11821301 - Conep06aG0155100.1 Cone6ag1492 440376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1492 985 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524(InterPro)
Cone6ag1492 985 Pfam Leucine Rich Repeat 153 173 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 Pfam Leucine Rich Repeat 249 271 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 Pfam Leucine Rich Repeat 465 486 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 Pfam Leucine Rich Repeat 128 145 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 Pfam Leucine Rich Repeat 416 438 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 Pfam Leucine Rich Repeat 488 509 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 FunFam Leucine-rich repeat receptor-like protein kinase 32 193 - -
Cone6ag1492 985 SMART serkin_6 691 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1492 985 Pfam Protein kinase domain 694 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1492 985 FunFam Leucine-rich repeat receptor-like protein kinase 770 985 - -
Cone6ag1492 985 FunFam Leucine-rich repeat receptor-like protein kinase TDR 316 630 - -
Cone6ag1492 985 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Cone6ag1492 985 SUPERFAMILY L domain-like 321 626 - -
Cone6ag1492 985 FunFam Leucine-rich receptor-like protein kinase family protein 216 314 - -
Cone6ag1492 985 SUPERFAMILY Protein kinase-like (PK-like) 686 980 IPR011009 -
Cone6ag1492 985 ProSiteProfiles Protein kinase domain profile. 691 985 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1492 985 Gene3D Phosphorylase Kinase; domain 1 676 769 - -
Cone6ag1492 985 SUPERFAMILY RNI-like 82 379 - -
Cone6ag1492 985 SMART LRR_typ_2 438 462 IPR003591 -
Cone6ag1492 985 SMART LRR_typ_2 150 174 IPR003591 -
Cone6ag1492 985 SMART LRR_typ_2 247 271 IPR003591 -
Cone6ag1492 985 SMART LRR_typ_2 198 223 IPR003591 -
Cone6ag1492 985 SMART LRR_typ_2 510 533 IPR003591 -
Cone6ag1492 985 SMART LRR_typ_2 295 319 IPR003591 -
Cone6ag1492 985 SMART LRR_typ_2 558 582 IPR003591 -
Cone6ag1492 985 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 378 980 IPR051716 -
Cone6ag1492 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1492 985 Pfam Leucine rich repeat 512 569 IPR001611 GO:0005515(InterPro)
Cone6ag1492 985 Gene3D Transferase(Phosphotransferase) domain 1 770 984 - -
Cone6ag1492 985 Gene3D Ribonuclease Inhibitor 33 194 IPR032675 -
Cone6ag1492 985 Gene3D Ribonuclease Inhibitor 274 631 IPR032675 -
Cone6ag1492 985 Gene3D Ribonuclease Inhibitor 200 273 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1492 Cone-Chr6:11817691 Cone9ag0992 Cone-Chr9:5100982 4.83E-84 dispersed
Cone6ag1492 Cone-Chr6:11817691 Cone6ag1494 Cone-Chr6:11836339 8.50E-80 proximal
Cone12ag0193 Cone-Chr12:979107 Cone6ag1492 Cone-Chr6:11817691 1.37E-188 wgd
Cone16ag0085 Cone-Chr16:455027 Cone6ag1492 Cone-Chr6:11817691 1.63E-66 wgd
Cone17ag1151 Cone-Chr17:8480964 Cone6ag1492 Cone-Chr6:11817691 7.86E-80 wgd
Cone4ag1266 Cone-Chr4:10422660 Cone6ag1492 Cone-Chr6:11817691 4.08E-70 wgd
Cone6ag1492 Cone-Chr6:11817691 Cone7ag0877 Cone-Chr7:6792849 4.00E-77 wgd
Cone6ag1492 Cone-Chr6:11817691 Cone8ag0188 Cone-Chr8:982485 3.41E-176 wgd
Cone6ag1492 Cone-Chr6:11817691 Cone9ag1416 Cone-Chr9:10501865 1.55E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82973 PF03195 LOB 3.00E-40 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1492 - - - 0.0