Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1494 ATGCGCCACCCCCTCCTTCTTCCTCCTCTCATCCTCCTAATCCTACACCTCCACGTTTTCCATTCATCCTCCGCTGCCGTTCCAGAATACAGAGCTCTTCTCACACTCAAAACTTCCATCACCGACGACCCCCAATCATCACTCGCCACGTGGAACGCTTCCACCAGCCATTGCACATGGGCTGGCGTCACGTGCGACCATCGCCGGCATGTGACCGACATCGACCTCTCCGGTCTCAATCTCTCCGGTTCTCTCTCCCCTGACATAGCTCACCTCCGTTTCCTCACGAACCTCTCCCTCGCTGCAAACCAGTTTGCCGGCCCAATCCCCCCAGAGATCTCCGCCATCTCGACGCTCCGGTATCTCAACCTGTCCAACAATGTCTTCAACGGCACCTTCCCGCCCGAGCTATGGCGGCTCAGAAATCTTCAAGTCCTGGATTTATACAACAATAACATGTCCGGTTTCTTACCCCTTGTCGTCACTCAAATGCCGAACCTCCTCCATTTACATCTTGGCGGGAACTTCTTCTCCGGCCAGATTCCACCGGAGTACGGAAAATGGCAGTTTCTCGAGTATTTAGCAGTTTCCGGCAACGAACTCGAAGGTTCAATCCCGCCGGAGATCGGAAACTTAACAAAACTCCGTGAACTCTACGTCGGATACTTCAACAGCTACGTAGGAGGCATTCCTGCAGAGATCGGAAACTTATCGGAGCTGATCAGGCTCGACGCAGCAAACTGCGGTTTGACCGGAGAGATTCCGGCTGAGATTGGGAATCTGCAGAAACTCGATACTCTGTTTCTTCAAGTCAATGCTTTATCCGGACCTCTAACTTCCGAGCTCGGAAGCTTAAAGAGCTTGAAATCCATGGATTTATCGAACAACATGCTAACCGGCGAGATTCCGACGTCGTTTTCAGAGCTCAACAACTTAACTTTACTGAACCTCTTCAGAAATAAGCTTCACGGCGCTATTCCTGACTTCATCGGAGACTTGCCGGCTTTAGAGGTTCTCCAGCTGTGGGAAAACAACTTCACCGGCTCTATACCTCAAAACCTGGGCAAAAACAGAAAGCTCCAGATTCTAGATCTTTCTTCTAACAAACTGACCGGAATCCTCCCGCCCGACATGTGCTCAGGCAACCACCTCCAGACCCTAATCACTCTCGGAAACTTCCTGTTCGGTCCAATCCCCGATTCGCTAGGAAAATGCGAGTCCTTGAGCCGGATTCGAATGGGAGAAAACTTCCTCAATGGCTCCATTCCCAAAGGTCTTTTCGGTTTACCAAAACTTACTCAAGTCGAATTACAAGACAACTACTTAGCCGGGCAGTTTCCAGTGACTGACTCTATCTCGGTCAATCTCGGGCAGATCAGTTTGTCCAACAACCGCCTCTCCGGGTCATTACCACCTTCAATCGGAAACTTTTCCGGGGTCCAGAAGCTTCTACTAGACGGAAACAAGTTCTCGGGTCAAATTCCACCTGAAATCGGCCAACTACAACAACTCTCTAAGATCGACTTTAGCCATAACAAATTTTCCGGCCAAATCGCCTCGGAATTAAGCCAATGTAAGCTCTTAACTTTTGTCGATCTTAGTCGGAACGAGCTAGTAGGAGAAATTCCAAATGAGATAACCACCATGAGAATATTAAACTATCTAAATCTTTCGAGAAACCATTTAGTTGGAACCATTCCTAGTTCAATATCATCTATGCAAAGCCTAACCTCTGTAGATTTCTCGTACAATAATCTTTCCGGTTTAGTTCCCGGAACGGGTCAATTCAGTTACTTCAACTACACGTCATTTCTCGGAAACCCAAATCTTTGTGGCCCTTATTTAGGCCCGTGTAAAAACGGGGTTGCAAACGGTACCCATCAAGCACATGTTAAAGGCCCTCTTTCGGCTTCTTTAAAGCTCCTTCTAGTCATAGTACTGTTAGTATGCTCCATTGCATTTGCCGTAGCAGCAATTATAAAAGCCCGTTCTTTAAAACGAGCAAGTGAAGCTCGAGCTTGGAAATTAACGGCTTTTCAAAGGCTGGATTTTACAGCCGATGATGTGTTAGATTGCTTGAAAGAAGATAACATTATAGGCAAAGGTGGGGCTGGGATTGTTTATAAAGGGGTAATGCCAAATGGAGACAGTGTCGCTGTTAAAAGGTTGCCTGCTATGAGCAGGGGATCATCTCATGACCATGGATTCAATGCAGAGATTCAAACCCTAGGGAGGATTAGGCATAGACATATTGTTAGATTGCTCGGGTTTTGTTCGAATCATGAGACAAATCTCTTGGTTTATGAGTACATGCCTAACGGGAGCTTGGGTGAAGTTCTTCATGGGAAGAAAGGAGGTCATTTGCTGTGGGACACTAGGTATAAGATTGCTATTGAGGCTGCTAAGGGTCTTTGTTATCTTCATCATGATTGCTCTCCTTTGATCGTTCATAGAGACGTGAAATCGAACAATATTTTGCTGGACTCGAATTTGGAGGCCCATGTCGCTGATTTCGGGTTGGCTAAATTTCTTCAAGATTCCGGAACTTCGGAATGCATGTCTGCTATTGCCGGTTCTTATGGTTATATCGCCCCAGAGTATGCTTATACTTTGAAGGTGGATGAGAAGAGTGATGTATACAGTTTTGGAGTAGTTTTGTTAGAGCTAGTAACGGGGCGAAAACCGGTAGGAGAATTTGGGGACGGAGTGGACATAGTTCAGTGGGTCCGAAAAATGACGGACTCAAACAAGGAAGGTGTCTTGAAAGTAATCGATCCGAGACTGTCCTCAGTCCCTCTTGATGAAGTAATGCATGTGTTCTATGTTGCTATGCTTTGCGTCGAAGAACAAGCCGTAGAGCGGCCCACAATGCGGGAAGTCGTCCAAATTTTGACTGAAATGCCAAAACCATCCCCAAGCTTGAAAGTTACAGATCAACTTTCTGCAACAACCGATGCCTCTCTGCCGCCACCATCCGCCACAGCCACAACCCCTGCCTTAGAATCTCCGCCTCAGTCTCCGGCAACTGATCTGCTTAGTATTTGA 3045 47.19 MRHPLLLPPLILLILHLHVFHSSSAAVPEYRALLTLKTSITDDPQSSLATWNASTSHCTWAGVTCDHRRHVTDIDLSGLNLSGSLSPDIAHLRFLTNLSLAANQFAGPIPPEISAISTLRYLNLSNNVFNGTFPPELWRLRNLQVLDLYNNNMSGFLPLVVTQMPNLLHLHLGGNFFSGQIPPEYGKWQFLEYLAVSGNELEGSIPPEIGNLTKLRELYVGYFNSYVGGIPAEIGNLSELIRLDAANCGLTGEIPAEIGNLQKLDTLFLQVNALSGPLTSELGSLKSLKSMDLSNNMLTGEIPTSFSELNNLTLLNLFRNKLHGAIPDFIGDLPALEVLQLWENNFTGSIPQNLGKNRKLQILDLSSNKLTGILPPDMCSGNHLQTLITLGNFLFGPIPDSLGKCESLSRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLAGQFPVTDSISVNLGQISLSNNRLSGSLPPSIGNFSGVQKLLLDGNKFSGQIPPEIGQLQQLSKIDFSHNKFSGQIASELSQCKLLTFVDLSRNELVGEIPNEITTMRILNYLNLSRNHLVGTIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPNLCGPYLGPCKNGVANGTHQAHVKGPLSASLKLLLVIVLLVCSIAFAVAAIIKARSLKRASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGVMPNGDSVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLLWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNLEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVIDPRLSSVPLDEVMHVFYVAMLCVEEQAVERPTMREVVQILTEMPKPSPSLKVTDQLSATTDASLPPPSATATTPALESPPQSPATDLLSI 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11836339 11840008 - Conep06aG0155300.1 Cone6ag1494 440378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1494 1014 Gene3D Ribonuclease Inhibitor 186 310 IPR032675 -
Cone6ag1494 1014 Pfam Leucine Rich Repeat 142 160 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 359 379 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 336 356 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 481 501 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 240 261 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Pfam Leucine Rich Repeat 552 573 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 Gene3D Ribonuclease Inhibitor 311 624 IPR032675 -
Cone6ag1494 1014 SUPERFAMILY Protein kinase-like (PK-like) 689 964 IPR011009 -
Cone6ag1494 1014 MobiDBLite consensus disorder prediction 971 1014 - -
Cone6ag1494 1014 Pfam Protein kinase domain 695 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1494 1014 Gene3D Phosphorylase Kinase; domain 1 661 770 - -
Cone6ag1494 1014 ProSiteProfiles Leucine-rich repeat profile. 359 380 IPR001611 GO:0005515(InterPro)
Cone6ag1494 1014 SMART LRR_typ_2 333 357 IPR003591 -
Cone6ag1494 1014 SMART LRR_typ_2 573 596 IPR003591 -
Cone6ag1494 1014 SMART LRR_typ_2 285 309 IPR003591 -
Cone6ag1494 1014 SMART LRR_typ_2 358 381 IPR003591 -
Cone6ag1494 1014 SMART LRR_typ_2 140 163 IPR003591 -
Cone6ag1494 1014 SMART LRR_typ_2 164 188 IPR003591 -
Cone6ag1494 1014 SMART LRR_typ_2 501 525 IPR003591 -
Cone6ag1494 1014 SUPERFAMILY RNI-like 73 395 - -
Cone6ag1494 1014 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 771 981 - -
Cone6ag1494 1014 SMART serkin_6 693 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1494 1014 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 86 329 - -
Cone6ag1494 1014 SUPERFAMILY L domain-like 302 619 - -
Cone6ag1494 1014 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 662 770 - -
Cone6ag1494 1014 ProSiteProfiles Protein kinase domain profile. 693 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1494 1014 MobiDBLite consensus disorder prediction 972 1014 - -
Cone6ag1494 1014 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Cone6ag1494 1014 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 966 IPR050647 -
Cone6ag1494 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1494 1014 Gene3D Transferase(Phosphotransferase) domain 1 771 982 - -
Cone6ag1494 1014 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cone6ag1494 1014 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 337 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0059 Cone-Chr10:357003 Cone6ag1494 Cone-Chr6:11836339 6.63E-59 dispersed
Cone13ag0399 Cone-Chr13:3641599 Cone6ag1494 Cone-Chr6:11836339 1.56E-158 dispersed
Cone17ag1415 Cone-Chr17:9711716 Cone6ag1494 Cone-Chr6:11836339 7.53E-160 dispersed
Cone1ag0381 Cone-Chr1:3251741 Cone6ag1494 Cone-Chr6:11836339 1.68E-164 dispersed
Cone1ag1071 Cone-Chr1:55317892 Cone6ag1494 Cone-Chr6:11836339 3.67E-94 dispersed
Cone3ag0913 Cone-Chr3:4685111 Cone6ag1494 Cone-Chr6:11836339 9.69E-158 dispersed
Cone5ag0784 Cone-Chr5:3359258 Cone6ag1494 Cone-Chr6:11836339 1.62E-96 dispersed
Cone6ag1494 Cone-Chr6:11836339 Cone9ag1418 Cone-Chr9:10516382 5.23E-282 dispersed
Cone6ag1492 Cone-Chr6:11817691 Cone6ag1494 Cone-Chr6:11836339 8.50E-80 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82974 PF00337 Gal-bind_lectin 9.20E-50 CL0004 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1494 - - - 0.0