Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1495 ATGGATCGGAATTCATCTGCCGAATGGTTCTATGAAATGGAATTAATGGATCAAGATCCTGCATATGTTCAAGAACACTTGATGAACTCGTTCGACCATACACTTGACGAGTTCAATATTCATACCCTGAATTCGTCTGATCAGTACTATCAAAGCTACTCTCTGATCAATCATAATTATAAAAAAACCCAGCTTAGTGCTTCATCTTCCTATAATGAAACAACTCCCTGTCAATCGGTGGTTGATCAAGATGATCAAAGGCCAGCAAAGCAACTAAAGACCAACGGTTGGAGCTCTCCCATGGCTTCTGCTAATTCTTCTTCGACTTCTCCTAAGATTATTTCTTTTGACAAGTTTCATAGAACTACTACAACTCCATGTTCTAATTATCCTGAGAAATTATATGGTGCGGCCGGAAACGGCACCACCGCTACTGCGAAGCCAAAGACTGAGGCTGCAGTGGTATCAGATGGAACCTGCATAAATTTCTCAAACGCTGCGACTAATGCCTATTGTAATTCTGATCATAATCAAACCTCTAAGCGATATGGTCAACAGTTTCAGAAAATGTCAGTAGCAATGAGTAGAACTCCTTTACATGCTCAAGATCACGTGATAGCTGAGAGGAAACGTAGAGAGAAGCTTAGCCAGAGGTTTATTGCTCTTTCAGCCCTTCTTCCAGGCTTAAAAAAGATGGACAAGGCTTCAGTTCTTGGGGATGCAGTAAAATATGTGAAGCAACTCCAAGAGCGTCTGAAAGTTCTAGAAGAACAGGCAACAAAAAGAACAGTTGAGTCGGTGGTTTACATGAAGAGAACCCATTTATCTCCTGATCATGCTGATAGTCATGATACGACAACTTGTTCGTCTGACGAAGATTCTAGCACCTTCTCTGACCAACAACTTCCTCAAATTGAAGCAAAAGTTTCAGACAAAGATATTCTAGTAAGGATTCACTGCGAGAAACACAAAGGGTGTTTATTAAACACTCTTAACGAGATCGAGAAGCTTCATTTGAACATCATCAATAGCACTGTCTTGTCCTTCGGATGCTCGACTCTCGACATAACTATTATTGCTAAGATGGAGGCTGAATTCTGTTTGACAGCGAAGGATCTTGTTACGAAGCTAAGGAATGTTTTAGCTGTCCAATTCATAATCTGA 1164 40.55 MDRNSSAEWFYEMELMDQDPAYVQEHLMNSFDHTLDEFNIHTLNSSDQYYQSYSLINHNYKKTQLSASSSYNETTPCQSVVDQDDQRPAKQLKTNGWSSPMASANSSSTSPKIISFDKFHRTTTTPCSNYPEKLYGAAGNGTTATAKPKTEAAVVSDGTCINFSNAATNAYCNSDHNQTSKRYGQQFQKMSVAMSRTPLHAQDHVIAERKRREKLSQRFIALSALLPGLKKMDKASVLGDAVKYVKQLQERLKVLEEQATKRTVESVVYMKRTHLSPDHADSHDTTTCSSDEDSSTFSDQQLPQIEAKVSDKDILVRIHCEKHKGCLLNTLNEIEKLHLNIINSTVLSFGCSTLDITIIAKMEAEFCLTAKDLVTKLRNVLAVQFII 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11848771 11850439 - Conep06aG0155400.1 Cone6ag1495 440379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1495 387 Gene3D - 191 263 IPR036638 GO:0046983(InterPro)
Cone6ag1495 387 Pfam Helix-loop-helix DNA-binding domain 204 249 IPR011598 GO:0046983(InterPro)
Cone6ag1495 387 PANTHER BHLH TRANSCRIPTION FACTOR 22 381 IPR052610 -
Cone6ag1495 387 CDD bHLH_AtNAI1_like 200 272 - -
Cone6ag1495 387 SMART finulus 205 254 IPR011598 GO:0046983(InterPro)
Cone6ag1495 387 Coils Coil 238 265 - -
Cone6ag1495 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 270 IPR036638 GO:0046983(InterPro)
Cone6ag1495 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983(InterPro)
Cone6ag1495 387 MobiDBLite consensus disorder prediction 275 300 - -
Cone6ag1495 387 MobiDBLite consensus disorder prediction 71 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1495 Cone-Chr6:11848771 Cone9ag1420 Cone-Chr9:10535519 2.16E-217 dispersed
Cone6ag1495 Cone-Chr6:11848771 Cone6ag1496 Cone-Chr6:11857675 9.08E-154 tandem
Cone12ag0195 Cone-Chr12:989911 Cone6ag1495 Cone-Chr6:11848771 7.03E-69 wgd
Cone6ag1495 Cone-Chr6:11848771 Cone8ag0189 Cone-Chr8:991113 8.92E-66 wgd
Cone6ag1495 Cone-Chr6:11848771 Cone9ag1419 Cone-Chr9:10528658 4.59E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46406 PF00337 Gal-bind_lectin 1.10E-49 CL0004 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1495 - - - 0.0