Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1496 ATGGATCTGAATGCCGAATTGTTTTATGAAATGGGATTAATGGATCAAGATCATGCATTTGCTCAAGAATACTTGATGAACTCACTCGACTATACTCAGCTCGATGATCAGTTCGACATTCACACCCTTAATTCTTCTGATCAGTATGAAATCTACTCTCAGATCAATCCTAAAACGACAACGTATCATCATTATCATAATGATGTCAACCTAATTGGTGCTTCATCTTCCATTAATGAAACTACACCTTGTGTATCGGTTCTTGATCAAGAGGATCAACGGCCAGAAAAGCAGCCGAAGGTCAACGGCTGCTGGAACTCTCCCGTGGAAGCTTCTGCTAACTCTTCTTCGACTTCTCAGAAGATTATTTCATTCGAAAACTCTCGTACTACTGTGAAGCCTAAGATTGAGGTGGCGGTGGGGTCACATGGAACCTGCATCAATTTCTCAACGGATCTGATTAACGCTTATAGTAATTCTGATCATGATCAAACCTCTAAGCAATATCGTCAAGGATTTCATAAGAGATCAGCAGCAATGGCTAGAACCCCTTTACATGCTCATGATCACGTGGTCGCTGAGAGGAAACGCAGGGAGAAGCTTAGCCAGAGGTTTATTGCGCTTTCAGCCCTCCTTCCGGGCTTAAAAAAGATGGACAAGGCTTCAGTTCTTGGGGACGCAGTAAAGTACGTGAAGCAACTTCAAGAAAGTCTGAAAGTCCTAGAAGAACAGGCAACAAAGAAAACAGTTGAATCAGTGATTTATATGAAAAGAACACATTTATCTAATGATCTTGATGATCAATATCATGACATGACTACTTCTTCATCTGATGAAGATTCAAGTAGCTTGTCAGACGAACCACTCCCTCAAATTGAAGCAAGAATTTCAGACAAGGATGTTCTTGTAAGAATTCATTGTGAGAAACACAAAGGATGTTTAGCAAACATTCTTAACGAGATGGAGAAGCTTCAGTTGACCATCATCAATAGCACTGTCTTGCCCTTTGGATGTTCTACTTTCGATATCACTGTTGTTGCTAAGATGGAGGTTGATTTATGTTCAACAGCGAGGGATCTCGTTAGGAAGCTAAGGAATGCTTTGATGCTTTCCAATTCATGA 1122 40.64 MDLNAELFYEMGLMDQDHAFAQEYLMNSLDYTQLDDQFDIHTLNSSDQYEIYSQINPKTTTYHHYHNDVNLIGASSSINETTPCVSVLDQEDQRPEKQPKVNGCWNSPVEASANSSSTSQKIISFENSRTTVKPKIEVAVGSHGTCINFSTDLINAYSNSDHDQTSKQYRQGFHKRSAAMARTPLHAHDHVVAERKRREKLSQRFIALSALLPGLKKMDKASVLGDAVKYVKQLQESLKVLEEQATKKTVESVIYMKRTHLSNDLDDQYHDMTTSSSDEDSSSLSDEPLPQIEARISDKDVLVRIHCEKHKGCLANILNEMEKLQLTIINSTVLPFGCSTFDITVVAKMEVDLCSTARDLVRKLRNALMLSNS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11857675 11859271 + Conep06aG0155500.1 Cone6ag1496 440380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1496 373 CDD bHLH_AtNAI1_like 186 258 - -
Cone6ag1496 373 Gene3D - 186 257 IPR036638 GO:0046983(InterPro)
Cone6ag1496 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983(InterPro)
Cone6ag1496 373 SMART finulus 191 240 IPR011598 GO:0046983(InterPro)
Cone6ag1496 373 Pfam Helix-loop-helix DNA-binding domain 190 235 IPR011598 GO:0046983(InterPro)
Cone6ag1496 373 Coils Coil 224 251 - -
Cone6ag1496 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 254 IPR036638 GO:0046983(InterPro)
Cone6ag1496 373 MobiDBLite consensus disorder prediction 266 289 - -
Cone6ag1496 373 MobiDBLite consensus disorder prediction 92 112 - -
Cone6ag1496 373 PANTHER BHLH TRANSCRIPTION FACTOR 14 368 IPR052610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1496 Cone-Chr6:11857675 Cone9ag1422 Cone-Chr9:10561808 3.11E-173 dispersed
Cone6ag1495 Cone-Chr6:11848771 Cone6ag1496 Cone-Chr6:11857675 9.08E-154 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46407 PF00337 Gal-bind_lectin 1.30E-49 CL0004 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1496 - - - 0.0