Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1502 ATGATGTCTCCACCTCTGATGGGTTCTGAGGCAGAAGGGCTAAGCAATATCTCCACCACAGCTTCTTCACCTCCCATGGAATGTCTATCCCAAAACAGCACGGGATTAAAGGAACGAAACTACCTGGGATTATCATCAGATTGTTCTTCAGTTGACAGTTCTACATTGCCAAGCTTGTCAGACGGGAACAAGAAAAATCTCAATTTGAAGGCTACAGAGTTGAGGCTTGGTCTTCCCCAATCCCAGTCGCCTGATCAAGAACCTGAATTTTCTGCGCTGAGTTCCACGAAGAAACTTGACGAGAAACCTCTCTTTCCATTGCTTCCGTCAAAGGATGGAATTTGCTCTTCTTCACAGAAGAATGTTGCTTCTGGTAACAAAAGGGGGTTTTCTGATACTAATTCTATGTATGGTGAAGGAAACTGGATTTTTCATGCAGCTGGATCTGATTTGGACTCTACTCAATGTGGGGTGCAAGGGAAGTTTCAGGGAAATTCAGGGATTAATGTAATGCTATCTTCTTGGCCTTCTGGGCCTCAACCAACTGTAAAGAAAGAATTGCCCTCAAACAATCACAACAGTGCTCCAGCTTCTAAGACACAGGTTGTTGGTTGGCCTCCGATAAGATCATTCAGGAAGAATTCATTGGCTACTACCTCTAAAGCCAATGATGAGGTTGATGGGAAACCAGGTTCTGGTGCGCTTTTTGTCAAGGTGAGTATGGATGGTGCTCCATATTTGAGGAAGGTAGATCTGACAACTTACTCTACATATCAGGAGCTTTCTTCTGCTCTTGAAAGGATGTTTTGCTGTTTTACCCTAGGTCAATGTGGATCTCATGGAGCTCAAGGTAGAGAGAGGATGAGTGAAAGTAAGCTGAGGGATTTCCTGCATGGGTCGGAATATGTGCTTACTTATGAGGATAAGGATGGTGACTGGATGCTTGTTGGGGATGTTCCATGGGAGATGTTCATTGCTTCGTGCAAGAGGCTAAAAATTATGAAGGGCTCTGATGCCATCGGTTTAGCACCAAGAACAACGGAGAAATTGAAGAACAGGATCAGCTAG 1068 44.29 MMSPPLMGSEAEGLSNISTTASSPPMECLSQNSTGLKERNYLGLSSDCSSVDSSTLPSLSDGNKKNLNLKATELRLGLPQSQSPDQEPEFSALSSTKKLDEKPLFPLLPSKDGICSSSQKNVASGNKRGFSDTNSMYGEGNWIFHAAGSDLDSTQCGVQGKFQGNSGINVMLSSWPSGPQPTVKKELPSNNHNSAPASKTQVVGWPPIRSFRKNSLATTSKANDEVDGKPGSGALFVKVSMDGAPYLRKVDLTTYSTYQELSSALERMFCCFTLGQCGSHGAQGRERMSESKLRDFLHGSEYVLTYEDKDGDWMLVGDVPWEMFIASCKRLKIMKGSDAIGLAPRTTEKLKNRIS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11902934 11905978 - Conep06aG0156100.1 Cone6ag1502 440386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1502 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 340 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Cone6ag1502 355 MobiDBLite consensus disorder prediction 77 93 - -
Cone6ag1502 355 Gene3D - 230 348 - -
Cone6ag1502 355 Pfam AUX/IAA family 71 345 IPR033389 -
Cone6ag1502 355 MobiDBLite consensus disorder prediction 12 34 - -
Cone6ag1502 355 MobiDBLite consensus disorder prediction 45 64 - -
Cone6ag1502 355 MobiDBLite consensus disorder prediction 77 96 - -
Cone6ag1502 355 FunFam Auxin-responsive protein 229 346 - -
Cone6ag1502 355 ProSiteProfiles PB1 domain profile. 234 338 IPR053793 -
Cone6ag1502 355 MobiDBLite consensus disorder prediction 1 34 - -
Cone6ag1502 355 MobiDBLite consensus disorder prediction 178 200 - -
Cone6ag1502 355 SUPERFAMILY CAD & PB1 domains 231 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1502 K14484 - - vvi:132254101 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0723 Cone-Chr16:8400918 Cone6ag1502 Cone-Chr6:11902934 7.50E-31 dispersed
Cone20ag0571 Cone-Chr20:3258149 Cone6ag1502 Cone-Chr6:11902934 1.89E-126 dispersed
Cone4ag0748 Cone-Chr4:4139808 Cone6ag1502 Cone-Chr6:11902934 3.10E-90 dispersed
Cone6ag1502 Cone-Chr6:11902934 Cone7ag0696 Cone-Chr7:3958659 1.41E-89 dispersed
Cone17ag1158 Cone-Chr17:8545824 Cone6ag1502 Cone-Chr6:11902934 1.12E-127 wgd
Cone4ag1274 Cone-Chr4:10469768 Cone6ag1502 Cone-Chr6:11902934 1.40E-123 wgd
Cone6ag1502 Cone-Chr6:11902934 Cone9ag1428 Cone-Chr9:10612327 6.79E-246 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46408 PF03446 NAD_binding_2 1.20E-20 CL0063 Cone TR