Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1512 ATGCCTTCCTCTCTCTTCATCAACTTACTTCTCTTCACTATTTCTCGTTTCTTCCTCCCTTTTACCTGTTCAATCTATTTCCAAATAAGTCATTTTGATCCCACTTCCGAAGGCATCACATATCGAGGAGATGCCAAGCCATCTGATGGGTTCGTCGCATTTAATAGAATCGATTACATTTCCCGTGTCGGTTGGGCCACTTATTCCCAGCCAATAGAGCTCTGGGACTCCACCACAGGAAAACTTTTTGACTTTGTAACAAATTTCTCATTTGTTATAAACACACTAGCTAATTCTAAACATGGGCATGGACTCACATTCTTTCTTGCTCCTTTCGAATTTGATATACCACCAAATTCATCGGGCGGCTTTCTAGGCCTATTTAACACCACCACTGGTGACGCAAGTGACAACCAGATTGTTCTAGTTGAGTTTGATTCTTTTTCGGATCCTCAATGGGACCCTCCCGTTCAACATGTCGGAATTAATTCCAACTCTATTTGCTCTTCAGTTTATACGTCTTGGAATGCTAGTCTTCACAGTGGAGATACTGTCAATGTTTCGATCACTTATAATGCTACTACTAAGAACTTGACCGTGTCATGGAATTACCTACGTTCCTCGACTATACAAGAGAATACTAGTCTACATTACCAGATTGATCTAATGAAGGTTTTGCCCAAGCAGGTCATGATCGGATTTTCAGCTTCCACCGGTGAAGATGTCGAGCAACATAGCCTTTATTCATGGCAATTCATGTCAGGTTTAGATATAATCCCCAAAAATGGAAAACCTGAGAAAACAGGAAATTTTGTAGAGGTGATAATAATTTCTGGGGCGGTTCTGGTAGGTGTGTTCGTCATAGCAGTTGCAATAGTTTGGAGGCAAAAGCAAAAGATGGAGGAGAAAAAGAAAGTGGTGAACTTGACATTGATCAACGATGATATCAAAAGAGGAGTGGGACCAAGAAGGTTTTCATATAGAAGTCTTTGTTTGGCTACTAACAACTTCTCGAACGACCGGAAGTTGGGAGAAGGAGGGTTTGGTACCGTTTACAAAGGGCATTTAACCGATAACACTATGTCTGTGGCTGTGAAGAGGATCTCAAGAGGATCAAGGCAAGGGAAAAGAGAGTACATAACGGAAGTGAAGATCATTAGCCGGGTGAGGCATCGGAATTTGGTGCAATTCATCGGCTGGTGCCATGATAAAGGAGAGTTTCTAATTGTCTATGAATTCATGCCGAACGGTAGCCTTGATTCTCACCTCTTCGGCAAAAGACCATCTCTTCCTTGGGCTGTAAGATACAAAATATCATTGGGATTAGCTTCTGCATTGCTCTATCTCCATGAAGAATGGGAACAATGTGTCGTTCATAGAGATATCAAATCAAGTAATGTAATGTTGGATTCTGATTTCACCGTGAAGCTAGGCGATTTCGGATTAGCCCGGCTTATGGACCACGAGAGAAATTCTCAAACAACTGGCTTGGCTGGGACATTTGGTTACATGGCTCCAGAATACATAAGTACTGGTCGAGCAAGTAAAGAATCAGATGTTTTCAGTTACGGGGTTGTTGCTTTAGAGATTGCGACTGGAAGAAAGTCGAACGATCCGCTGGAAATGGATTCTCATATGGGACTAGTAGAGTGGATTTGGGATCTGTACGGAAGAGGTGAGCTTCATCAAGCTATGGATGAGAGATTAGATAAGAATATTGATCTGAAGCAAATAGAATGTTTGATGGTTGCCGGTTTATGGTGTGCTCATCCTGATCGAAGTGAACGGCCTTCCATAAAGCAAGTGATTAATGTTCTTAATTCTGAAGGGGAAATGCCAAATCTTCCGGCGAAAATGCCCGTTCCTACATTTCAAATGCCCAACCGTCCGTCTTTTTCTCATATCAAGAAACTATATGCGAGCACAAGTGTAGATACAAGTTGTTGA 1947 41.86 MPSSLFINLLLFTISRFFLPFTCSIYFQISHFDPTSEGITYRGDAKPSDGFVAFNRIDYISRVGWATYSQPIELWDSTTGKLFDFVTNFSFVINTLANSKHGHGLTFFLAPFEFDIPPNSSGGFLGLFNTTTGDASDNQIVLVEFDSFSDPQWDPPVQHVGINSNSICSSVYTSWNASLHSGDTVNVSITYNATTKNLTVSWNYLRSSTIQENTSLHYQIDLMKVLPKQVMIGFSASTGEDVEQHSLYSWQFMSGLDIIPKNGKPEKTGNFVEVIIISGAVLVGVFVIAVAIVWRQKQKMEEKKKVVNLTLINDDIKRGVGPRRFSYRSLCLATNNFSNDRKLGEGGFGTVYKGHLTDNTMSVAVKRISRGSRQGKREYITEVKIISRVRHRNLVQFIGWCHDKGEFLIVYEFMPNGSLDSHLFGKRPSLPWAVRYKISLGLASALLYLHEEWEQCVVHRDIKSSNVMLDSDFTVKLGDFGLARLMDHERNSQTTGLAGTFGYMAPEYISTGRASKESDVFSYGVVALEIATGRKSNDPLEMDSHMGLVEWIWDLYGRGELHQAMDERLDKNIDLKQIECLMVAGLWCAHPDRSERPSIKQVINVLNSEGEMPNLPAKMPVPTFQMPNRPSFSHIKKLYASTSVDTSC 648
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 11949123 11951069 + Conep06aG0157100.1 Cone6ag1512 440396
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1512 648 Pfam Legume lectin domain 26 261 IPR001220 GO:0030246(InterPro)
Cone6ag1512 648 FunFam Lectin-domain containing receptor kinase A4.3 414 626 - -
Cone6ag1512 648 Gene3D Phosphorylase Kinase; domain 1 322 413 - -
Cone6ag1512 648 Gene3D Transferase(Phosphotransferase) domain 1 414 627 - -
Cone6ag1512 648 FunFam L-type lectin-domain containing receptor kinase IX.1 322 413 - -
Cone6ag1512 648 FunFam L-type lectin-domain containing receptor kinase IX.1 23 265 - -
Cone6ag1512 648 PANTHER - 56 616 IPR050528 GO:0005886(PANTHER)
Cone6ag1512 648 ProSiteProfiles Protein kinase domain profile. 337 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1512 648 SUPERFAMILY Protein kinase-like (PK-like) 321 632 IPR011009 -
Cone6ag1512 648 SMART serkin_6 337 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag1512 648 Gene3D - 23 262 - -
Cone6ag1512 648 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524(InterPro)
Cone6ag1512 648 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 256 IPR013320 -
Cone6ag1512 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1512 648 CDD STKc_IRAK 343 607 - -
Cone6ag1512 648 Pfam Protein tyrosine and serine/threonine kinase 340 605 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag1512 648 CDD lectin_legume_LecRK_Arcelin_ConA 25 256 IPR001220 GO:0030246(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1006 Cone-Chr12:8523023 Cone6ag1512 Cone-Chr6:11949123 1.39E-16 dispersed
Cone19ag0295 Cone-Chr19:2154855 Cone6ag1512 Cone-Chr6:11949123 1.52E-205 dispersed
Cone3ag1076 Cone-Chr3:29405308 Cone6ag1512 Cone-Chr6:11949123 2.74E-188 dispersed
Cone6ag1512 Cone-Chr6:11949123 Cone9ag1435 Cone-Chr9:10668309 0 dispersed
Cone6ag1511 Cone-Chr6:11942173 Cone6ag1512 Cone-Chr6:11949123 4.53E-256 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82976 PF00175 NAD_binding_1 1.10E-25 CL0091 Cone PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1512 - - - 0.0