Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1513 ATGGATAGGAAAAGACAGTACTTGAGCATGGTGCTAACCGGATCATCAGCCATGGCTGCTGCTTTAATGCTGTTATTCATGCTTACAGATTCATCTTACCATCATCACCAAGAAATATCGCCAATCAGACGACTTCTATTGCAAGTAAAGAGTAACGATTCAACTCAGCTGCCCAACGTCGTTCTACAAAGAGAATCTTCTCACGAGCGGGTAGTGATCATGGATAACGGATTTGTCCAAGTTACGTTATCACATCCTGATGGCGATGTCGTAGGTATTAAATACAACGGTGTTGACAACGTGCTTGAAGTTCTCAATGAAGACTACAATAGAGGGTATTGGGATGTCGTTTGGAACAAACCAGGAGACCCCATTTCCATTGACAGATTACGAGGAACAAAATTTGATGTAGTAATAGCCAACGAAGATCAATTAGAGCTTTCATTTATCAAAACATGGAATGTCTCAGATGGTGCCTCCTCAGCTCCCTTGATTGTAGATAAAAGGTATATATTGCTCCGTGGGATTTCAGGGTTTTATACATATGCGATATTCCAGCGTCTTCAAGGATTTCCAGAGATTGAGATGGACCAAATTAGAGCTGTCTACAAGCTTCAAAAGAACAAATTTCACTACATGGCCATATCAGACGACAGGCAGAGGATCATGCCAATGCCAGATGATCGAGAGGCTGGTCAACCCCTTGCTTATCCCGAGGCGGTTCTTCTAACAAACCCAACCAATCCAGAACTTAGAGGGGAGGTAGATGACAAATATCAATATTCATGTGAGGACAAAGACAATAAAGTTCACGGATGGATATGTAACGATCCATCTATAGGATTTTGGATGATCACACCTAGCGATGAATTTCGCATGGCTGGACCTGTCAAGCAAGACCTTACTTCCCATGTGGGGCCAGTTACCCTCTCAAGTCTTGTAAGCACCCATTATGCTGGGAAAGAAGTGGGGATGAAATTTGAAGAGGGTGAACCATGGAAGAAGGTTTTCGGGCCAATGCTGGTCTATTTAAACTCGGTTTCTACGGAAGAAGATTATAACAGAAATCTTTGGGAAGATGCCAAAAATCAGATGTCTATTGAAGTCAATAATTGGCCGTATAGTTTTCCTCAATCAGTTGATTTCCCTTCTTCTGATCAACGAGGAAGAGTCACTGGTCAATTAATTGTTCGTGACAGATACGTTCAAAAGCGATATGCTTGGGCTAAAAATGCATTTGTGGGATTGGCAGCACCTGGAGAAATTGGATCTTGGCAAAAAGAAAGCAAGGGTTATCAATTTTGGACTCAAGCTGATGGACACGGACATTTCTCAATTGATAATGTCCGAGTAGGGGATTATAATCTATATTCTTGGGTCCCTGGCTTTATTGGAGATCATAAGTATGAGAGCAATATTACTATTGAGGCAGGTGGTGAAATCAAGTTGGATCTTTTAGTCTATAGGCCACCTAGAGAGGGCCCGACTCTATGGGAGATAGGCATTCCCGATCGTTCGGCTGCTGAATTTTATATTCCCGACCCATATCCAACACTTATGAACCGTTTGTATAATGAAAATCAAGACAAGTTCAGACAATATGGCTTATGGGAGCGTTATGCCGATTTATATCCTGACAATGACCTTGTTTTCAATGTCGGCCTTGATGATTATCGTAATGATTGGTTTTTTGTGCAAGTTACCAGGAATATTGGAAATAAAACGTATGAAGCAACCACTTGGCAAATAAAATTTCAACTAGACAGGGTCAATCGAACCGGAAATTACACACTGCAGCTGGCATTAGCCTCGGCCACTGACTCCGACTTGCAGGTGAGATTCAATAACCCAAATGTGGAACCCGCACATTCTTCCACCGGAAGAATAGGGAAGGATAACGCCATAGCAAGGCATGGAATTCATGGACTTTACTGGTTATACAGTTTCAATATTATAGGTAGTCTACTTGACATTGGAAACAACGTAATCTATCTCACTCAGTCAATACACATAGGTCCATTTAATGGGATTATGTATGACTATATACGGCTTGAAGGTCCGCCGCCGGATACATGA 2076 41.86 MDRKRQYLSMVLTGSSAMAAALMLLFMLTDSSYHHHQEISPIRRLLLQVKSNDSTQLPNVVLQRESSHERVVIMDNGFVQVTLSHPDGDVVGIKYNGVDNVLEVLNEDYNRGYWDVVWNKPGDPISIDRLRGTKFDVVIANEDQLELSFIKTWNVSDGASSAPLIVDKRYILLRGISGFYTYAIFQRLQGFPEIEMDQIRAVYKLQKNKFHYMAISDDRQRIMPMPDDREAGQPLAYPEAVLLTNPTNPELRGEVDDKYQYSCEDKDNKVHGWICNDPSIGFWMITPSDEFRMAGPVKQDLTSHVGPVTLSSLVSTHYAGKEVGMKFEEGEPWKKVFGPMLVYLNSVSTEEDYNRNLWEDAKNQMSIEVNNWPYSFPQSVDFPSSDQRGRVTGQLIVRDRYVQKRYAWAKNAFVGLAAPGEIGSWQKESKGYQFWTQADGHGHFSIDNVRVGDYNLYSWVPGFIGDHKYESNITIEAGGEIKLDLLVYRPPREGPTLWEIGIPDRSAAEFYIPDPYPTLMNRLYNENQDKFRQYGLWERYADLYPDNDLVFNVGLDDYRNDWFFVQVTRNIGNKTYEATTWQIKFQLDRVNRTGNYTLQLALASATDSDLQVRFNNPNVEPAHSSTGRIGKDNAIARHGIHGLYWLYSFNIIGSLLDIGNNVIYLTQSIHIGPFNGIMYDYIRLEGPPPDT 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11957773 11962357 + Conep06aG0157200.1 Cone6ag1513 440397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1513 691 CDD RGL4_M 387 483 IPR029413 -
Cone6ag1513 691 Gene3D - 384 485 - -
Cone6ag1513 691 Gene3D - 63 360 IPR014718 GO:0030246(InterPro)
Cone6ag1513 691 Pfam Polysaccharide lyase family 4, domain II 410 482 IPR029413 -
Cone6ag1513 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 66 688 IPR051850 -
Cone6ag1513 691 CDD RGL4_C 498 685 - -
Cone6ag1513 691 SUPERFAMILY Starch-binding domain-like 386 487 IPR013784 GO:0030246(InterPro)
Cone6ag1513 691 SUPERFAMILY Galactose-binding domain-like 494 685 IPR008979 -
Cone6ag1513 691 FunFam Rhamnogalacturonate lyase B 384 483 - -
Cone6ag1513 691 SUPERFAMILY Galactose mutarotase-like 71 348 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cone6ag1513 691 CDD RGL4_N 72 350 - -
Cone6ag1513 691 Pfam Rhamnogalacturonate lyase family 67 255 IPR010325 -
Cone6ag1513 691 Pfam Polysaccharide lyase family 4, domain III 496 684 IPR029411 -
Cone6ag1513 691 Gene3D - 494 684 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1147 Cone-Chr14:9495685 Cone6ag1513 Cone-Chr6:11957773 0 transposed
Cone16ag0380 Cone-Chr16:6163787 Cone6ag1513 Cone-Chr6:11957773 2.42E-183 transposed
Cone4ag1283 Cone-Chr4:10549015 Cone6ag1513 Cone-Chr6:11957773 2.75E-283 wgd
Cone6ag1513 Cone-Chr6:11957773 Cone7ag0869 Cone-Chr7:6678678 1.04E-272 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1513 K18195 - csv:101215252 951.044