Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag1516 ATGGAGACACACAATCAGACAGGGCATACTACACAGAAAAAGATGCTTCTTCCTCAACCTGCAACATTTCAAGATCGGGAAGACCTCGTTAAATATGTTCGTGACTTTGGTGCTAATCAAGGATATGTTGTGACCATTAAGAAGTCTAGGAAGGACAGAAGAGTCATTCTTGGTTGTGACAGGGGAGGTGTATATCGTAACAGGCGTAAGATTGATGAAAGTAAGCGCAAACGGAAAGCAAGCTCACGCCTTATAAATTGCCCTTTTGAAGCCATTGGCAAAAAGGAGGATGATTTATGGGTGCTTACCATTAAGAATGAAGAGCACAACCATGAGCCCTTGAAAGATATGTCAGAACATCCTTATAGCCGTCGCTTCACTGAGGAAGAGGTTAGGAAAATTAAGGTGATGACAGAAGCCGGTGTAAAACCTCGTCAAGTGCTTAAAGCTCTCAAGCAATGTAATCCGAAGCTGCAGTCAACACCAAGGCACTTATACAACCTTAAGGCCAAGATTAGACAGGGAAACTTATCAGAGAAATTTTTTGCTTCGTGGAGGCCGAATAGAGCTATTTCAGTGAATGCTTCTGCTAATCCAAATGGCGATATAGCAAATGAAAACAACCAGCCGGTTCCAAATTTTATTGGCGGGAAATACATGGACTCACAGAGCTGTTCATCTGTTGATGTTATAGATCCTGCAACACAAGAAGTTGTTTCTCAAGTTCCCTTATCAACTTATGATGAATTTAAAGCTGCTGTAAACGCAGCCAAGAAAGCTTTTCTTTTGTGGAAGAATGCCCCTGTTACCTCTCGCCAACAAATTATGTTCAAGCTCCAAGAGCTCATCCGTAGAGATATTGATAAGCTTGCGATCAATATTGCTATAGAACAAGGGCAGACACGAAAGGGTGCTCAAAGGGATGTGCTTCATAGTTTAGAGGTGATTGAACATTCTTGTAGATTGGCAGCTTTGCAAATGGGGGAGTTCATTCCTAATATGCCTAATGGAATGGACACATATTCCATAAGAGAACCGCTTGGCGTTTGTGCTGGGATATGCCCCTTCAATTTTGCGTCAGTGGTTTCCTTGTGGATGTTTCCAATTGCAGTTACATGCGGCAACACATTTATCCTAAAGGCATGTGAAAAAAACCCAGGGGTGTCAATGATACTTGCAGCGCTAGCAATGGAGGCTGGTCTGCCTGATGGTGTCCTAAATGTTGTTCATGGTACCAATGATGTTTTGGACTATATCTGCGATGATGAAGATATAAAAGCTATATCTTTTGTTGGTTCAGATACTTTTGGAATGCAGATGTATGCTAAGGCAGCTGCTAGGGGGAAACGTATTCAGTCTAATATAGGAAGCAAAAACTATGCAATAATCATGCCTGATGCTAGCATGGATGCTAGTTTGAATGCTGTGGCTAGTATCGGCTTTGGACAGATGGGCATGTCTCTCGACACAGTTGTTTTTATTGGAGGATCAATCCAGTGGGAGGAAGAACTAGTTTTGCGTGTTAAGTCACTTAAAGTGAACGTCGGGACAGATCCAACTGCAGACATTGGTCCGGTAATTACCGAAGAGGTGAAAGATCATGTATGCAGATTAGTTCAGAGTGCTGTTCAAAGTGGTGCTAGACTTCTGCTTGATGGAAGATATGTTATGGTTCCAGGATATGAGAGCGGGAATTTTATTGGTCCAACTATCCTATCTGATGTTACAACCAACATGGACTGCTATAAGGAAGAAATATTTGGGCCAGTGCTTCTATGTATGCAGGCTGAGAGTCTAGAGGAGGCTATTACCATTGTAAACAGAAACAATCATGGAACTGGAGCTTCCATATTCACAACATCTGGCATTTCTGCAAGAAAGTTCCAGAACGAAGTGGAGGCTGGAATGGTTGGGATCAATGTTCCTGTTCCTTTGCCATTGTCTTCACTTAATGGTAAGGCGGGTCTAGAATTTTACACTCAGATCAAAACGGTGGCTCAGCGTTGGAATGATTTACCAACCCTAGGAGTCCCACTAGCTATGCCTTCATCGTCAGAGACAAGTGTGAGAAGTCTAGGATTATCCTCAGCTCTTCCTTCAACGTCTGGTAGAGATTCACCTCACCCTAGAATTTCACCATCAATGCCTTCTCCATCCGAGACAAATTCACTGAATCAGATTCCCCCACCTCTCTCTTCAAGGGTAGCATCACAACAATCCAAGAGAAATTCAATTCCACTTACCTCTGAGAGGATATATCATGTTAAGACATCTAATAGGACTGATCAGGCAATGGCCATGGCTAATGAGGGATACATCCCTGCTTCTCATGATATCAGTCCCATAACCCTCGGGATTGACAGTATACATCGAAATTCAGAGCGAGTATACATGCTAGCAACGTCACATTTGACTGAAAATTTGTGTCTAACATTTCAAAGAACTGACCCCACCCTGTTTTCCACTTCGGGTCCCACAATTCATAGACCTGACCAAATGGGGTCCAGATCTCTAAGCACTGATGTCTCCTTACAGTCAACTGCTGATAGAATATTTTTATCTGAACGAAATGACAATGTGCGTCCGGATTCTCAACATGGCGATAATGTCATTGCTTGTTCAGCTTCGGAAAAAATGTATATGCCTTCAGGGGTACATCGAAATTCCGGTGGGCCTGCGACCTCCGAATGGTTATGTATTCCTTCTCCAGCTACCTCTCAAATAATGTATTGTCAAGGAGCAATGATTACGGGGGATGACTTTACTAGCCAGGGTTTGCCACTGTCTTTACCTACGTCTCAGAGAATATAG 2811 42.83 METHNQTGHTTQKKMLLPQPATFQDREDLVKYVRDFGANQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESKRKRKASSRLINCPFEAIGKKEDDLWVLTIKNEEHNHEPLKDMSEHPYSRRFTEEEVRKIKVMTEAGVKPRQVLKALKQCNPKLQSTPRHLYNLKAKIRQGNLSEKFFASWRPNRAISVNASANPNGDIANENNQPVPNFIGGKYMDSQSCSSVDVIDPATQEVVSQVPLSTYDEFKAAVNAAKKAFLLWKNAPVTSRQQIMFKLQELIRRDIDKLAINIAIEQGQTRKGAQRDVLHSLEVIEHSCRLAALQMGEFIPNMPNGMDTYSIREPLGVCAGICPFNFASVVSLWMFPIAVTCGNTFILKACEKNPGVSMILAALAMEAGLPDGVLNVVHGTNDVLDYICDDEDIKAISFVGSDTFGMQMYAKAAARGKRIQSNIGSKNYAIIMPDASMDASLNAVASIGFGQMGMSLDTVVFIGGSIQWEEELVLRVKSLKVNVGTDPTADIGPVITEEVKDHVCRLVQSAVQSGARLLLDGRYVMVPGYESGNFIGPTILSDVTTNMDCYKEEIFGPVLLCMQAESLEEAITIVNRNNHGTGASIFTTSGISARKFQNEVEAGMVGINVPVPLPLSSLNGKAGLEFYTQIKTVAQRWNDLPTLGVPLAMPSSSETSVRSLGLSSALPSTSGRDSPHPRISPSMPSPSETNSLNQIPPPLSSRVASQQSKRNSIPLTSERIYHVKTSNRTDQAMAMANEGYIPASHDISPITLGIDSIHRNSERVYMLATSHLTENLCLTFQRTDPTLFSTSGPTIHRPDQMGSRSLSTDVSLQSTADRIFLSERNDNVRPDSQHGDNVIACSASEKMYMPSGVHRNSGGPATSEWLCIPSPATSQIMYCQGAMITGDDFTSQGLPLSLPTSQRI 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11972388 11979091 + Conep06aG0157500.1 Cone6ag1516 440400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag1516 936 CDD ALDH_F6_MMSDH 211 669 IPR010061 GO:0004491(InterPro)
Cone6ag1516 936 SUPERFAMILY ALDH-like 209 672 IPR016161 GO:0016491(InterPro)
Cone6ag1516 936 Pfam Transcription factor AFT 23 112 IPR014842 GO:0000981(InterPro)|GO:0010106(InterPro)|GO:0045944(InterPro)
Cone6ag1516 936 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 212 669 IPR010061 GO:0004491(InterPro)
Cone6ag1516 936 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 230 455 IPR016162 GO:0016491(InterPro)
Cone6ag1516 936 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 215 462 - -
Cone6ag1516 936 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 456 646 IPR016163 GO:0016620(InterPro)
Cone6ag1516 936 MobiDBLite consensus disorder prediction 680 750 - -
Cone6ag1516 936 MobiDBLite consensus disorder prediction 680 708 - -
Cone6ag1516 936 MobiDBLite consensus disorder prediction 715 750 - -
Cone6ag1516 936 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 456 651 - -
Cone6ag1516 936 Pfam Aldehyde dehydrogenase family 220 643 IPR015590 GO:0016491(InterPro)
Cone6ag1516 936 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 15 683 IPR010061 GO:0004491(InterPro)|GO:0004491(PANTHER)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1516 Cone-Chr6:11972388 Cone8ag1033 Cone-Chr8:9552255 3.97E-226 dispersed
Cone12ag1005 Cone-Chr12:8514370 Cone6ag1516 Cone-Chr6:11972388 1.61E-226 wgd
Cone6ag1516 Cone-Chr6:11972388 Cone9ag1436 Cone-Chr9:10678811 2.60E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46409 PF00160 Pro_isomerase 2.30E-45 CL0475 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag1516 K00140 - vvi:100254417 1124.38